Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1909 and GFF1910 are separated by 17 nucleotides GFF1910 and GFF1911 are separated by 223 nucleotides GFF1911 and GFF1912 are separated by 0 nucleotides GFF1912 and GFF1913 are separated by 106 nucleotides
GFF1909 - FIG00537389: hypothetical protein, at 589,951 to 590,607
GFF1909
GFF1910 - no description, at 590,625 to 590,879
GFF1910
GFF1911 - ABC transporter, substrate-binding protein (cluster 11, riboflavin/purine nucleoside/unknown), at 591,103 to 592,194
GFF1911
GFF1912 - Transcriptional regulator, LysR family, at 592,195 to 593,076
GFF1912
GFF1913 - Short-chain dehydrogenase, at 593,183 to 593,788
GFF1913
Position (kb) 591
592
593 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 590.128 kb on + strand, within GFF1909 at 590.128 kb on + strand, within GFF1909 at 590.128 kb on + strand, within GFF1909 at 590.128 kb on + strand, within GFF1909 at 590.129 kb on - strand, within GFF1909 at 590.650 kb on + strand at 590.651 kb on - strand, within GFF1910 at 590.651 kb on - strand, within GFF1910 at 590.983 kb on - strand at 590.983 kb on - strand at 591.023 kb on + strand at 591.091 kb on + strand at 591.091 kb on + strand at 591.091 kb on + strand at 591.091 kb on + strand at 591.091 kb on + strand at 591.091 kb on + strand at 591.091 kb on + strand at 591.091 kb on + strand at 591.092 kb on - strand at 591.092 kb on - strand at 591.092 kb on - strand at 591.092 kb on - strand at 591.092 kb on - strand at 591.092 kb on - strand at 591.092 kb on - strand at 591.092 kb on - strand at 591.092 kb on - strand at 591.092 kb on - strand at 591.092 kb on - strand at 591.092 kb on - strand at 591.092 kb on - strand at 591.106 kb on + strand at 591.106 kb on + strand at 591.107 kb on - strand at 591.107 kb on - strand at 591.107 kb on - strand at 591.159 kb on - strand at 591.159 kb on - strand at 591.208 kb on + strand at 591.208 kb on + strand at 591.209 kb on - strand at 591.209 kb on - strand at 591.209 kb on - strand at 591.209 kb on - strand at 591.209 kb on - strand at 591.209 kb on - strand at 591.304 kb on + strand, within GFF1911 at 591.304 kb on + strand, within GFF1911 at 591.304 kb on + strand, within GFF1911 at 591.304 kb on + strand, within GFF1911 at 591.304 kb on + strand, within GFF1911 at 591.304 kb on + strand, within GFF1911 at 591.304 kb on + strand, within GFF1911 at 591.304 kb on + strand, within GFF1911 at 591.304 kb on + strand, within GFF1911 at 591.305 kb on - strand, within GFF1911 at 591.305 kb on - strand, within GFF1911 at 591.305 kb on - strand, within GFF1911 at 591.305 kb on - strand, within GFF1911 at 591.305 kb on - strand, within GFF1911 at 591.305 kb on - strand, within GFF1911 at 591.305 kb on - strand, within GFF1911 at 591.401 kb on - strand, within GFF1911 at 591.401 kb on - strand, within GFF1911 at 591.466 kb on + strand, within GFF1911 at 591.505 kb on + strand, within GFF1911 at 591.506 kb on - strand, within GFF1911 at 591.508 kb on + strand, within GFF1911 at 591.508 kb on + strand, within GFF1911 at 591.508 kb on + strand, within GFF1911 at 591.509 kb on - strand, within GFF1911 at 591.509 kb on - strand, within GFF1911 at 591.509 kb on - strand, within GFF1911 at 591.572 kb on - strand, within GFF1911 at 591.572 kb on - strand, within GFF1911 at 591.814 kb on + strand, within GFF1911 at 591.815 kb on - strand, within GFF1911 at 591.883 kb on + strand, within GFF1911 at 591.883 kb on + strand, within GFF1911 at 591.884 kb on - strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.887 kb on - strand, within GFF1911 at 591.887 kb on - strand, within GFF1911 at 591.887 kb on - strand, within GFF1911 at 591.992 kb on + strand, within GFF1911 at 591.992 kb on + strand, within GFF1911 at 591.993 kb on - strand, within GFF1911 at 591.993 kb on - strand, within GFF1911 at 591.993 kb on - strand, within GFF1911 at 592.192 kb on + strand at 592.192 kb on + strand at 592.192 kb on + strand at 592.192 kb on + strand at 592.193 kb on - strand at 592.196 kb on + strand at 592.196 kb on + strand at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.772 kb on + strand, within GFF1912 at 592.772 kb on + strand, within GFF1912 at 592.773 kb on - strand, within GFF1912 at 592.773 kb on - strand, within GFF1912 at 592.884 kb on - strand, within GFF1912 at 592.884 kb on - strand, within GFF1912 at 592.884 kb on - strand, within GFF1912 at 593.076 kb on + strand at 593.120 kb on + strand at 593.157 kb on + strand at 593.157 kb on + strand at 593.158 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 590,128 + GFF1909 0.27 -0.0 590,128 + GFF1909 0.27 -0.7 590,128 + GFF1909 0.27 -0.1 590,128 + GFF1909 0.27 -0.5 590,129 - GFF1909 0.27 -1.0 590,650 + +0.0 590,651 - GFF1910 0.10 +0.2 590,651 - GFF1910 0.10 -1.1 590,983 - +0.3 590,983 - -0.3 591,023 + -0.3 591,091 + -0.0 591,091 + +0.1 591,091 + -0.4 591,091 + -1.9 591,091 + -0.5 591,091 + -0.8 591,091 + -1.1 591,091 + -0.1 591,092 - -0.5 591,092 - -0.5 591,092 - -0.9 591,092 - -1.1 591,092 - -0.8 591,092 - -0.7 591,092 - -0.2 591,092 - +0.0 591,092 - +0.7 591,092 - -0.4 591,092 - +0.8 591,092 - +0.3 591,092 - +1.1 591,106 + +0.9 591,106 + -0.2 591,107 - -0.5 591,107 - -0.5 591,107 - +0.4 591,159 - +0.0 591,159 - +0.3 591,208 + -0.7 591,208 + +0.8 591,209 - -0.1 591,209 - +0.4 591,209 - -0.1 591,209 - +2.5 591,209 - -0.0 591,209 - +0.2 591,304 + GFF1911 0.18 -0.3 591,304 + GFF1911 0.18 +0.7 591,304 + GFF1911 0.18 +1.3 591,304 + GFF1911 0.18 -0.3 591,304 + GFF1911 0.18 -0.1 591,304 + GFF1911 0.18 +0.6 591,304 + GFF1911 0.18 +0.0 591,304 + GFF1911 0.18 -0.8 591,304 + GFF1911 0.18 +1.2 591,305 - GFF1911 0.18 -0.3 591,305 - GFF1911 0.18 +0.1 591,305 - GFF1911 0.18 -0.2 591,305 - GFF1911 0.18 +0.3 591,305 - GFF1911 0.18 +0.4 591,305 - GFF1911 0.18 +0.2 591,305 - GFF1911 0.18 +2.9 591,401 - GFF1911 0.27 +0.4 591,401 - GFF1911 0.27 -0.9 591,466 + GFF1911 0.33 -0.4 591,505 + GFF1911 0.37 -0.4 591,506 - GFF1911 0.37 -1.1 591,508 + GFF1911 0.37 +0.0 591,508 + GFF1911 0.37 +0.0 591,508 + GFF1911 0.37 +0.2 591,509 - GFF1911 0.37 +2.1 591,509 - GFF1911 0.37 -0.1 591,509 - GFF1911 0.37 -0.1 591,572 - GFF1911 0.43 +1.7 591,572 - GFF1911 0.43 -1.4 591,814 + GFF1911 0.65 +0.7 591,815 - GFF1911 0.65 +0.3 591,883 + GFF1911 0.71 +0.6 591,883 + GFF1911 0.71 +1.1 591,884 - GFF1911 0.72 +0.4 591,886 + GFF1911 0.72 +0.4 591,886 + GFF1911 0.72 -0.4 591,886 + GFF1911 0.72 +0.1 591,886 + GFF1911 0.72 -0.5 591,886 + GFF1911 0.72 +0.1 591,886 + GFF1911 0.72 +0.7 591,886 + GFF1911 0.72 +0.5 591,886 + GFF1911 0.72 +0.5 591,886 + GFF1911 0.72 +0.4 591,887 - GFF1911 0.72 -0.5 591,887 - GFF1911 0.72 +0.3 591,887 - GFF1911 0.72 +0.5 591,992 + GFF1911 0.81 +0.6 591,992 + GFF1911 0.81 +1.7 591,993 - GFF1911 0.82 +0.7 591,993 - GFF1911 0.82 +0.1 591,993 - GFF1911 0.82 -0.3 592,192 + -0.1 592,192 + +0.5 592,192 + -1.5 592,192 + -0.1 592,193 - +0.2 592,196 + +1.7 592,196 + -0.1 592,736 + GFF1912 0.61 +1.2 592,736 + GFF1912 0.61 +0.1 592,736 + GFF1912 0.61 -0.7 592,736 + GFF1912 0.61 +2.1 592,736 + GFF1912 0.61 -0.2 592,736 + GFF1912 0.61 -1.0 592,736 + GFF1912 0.61 +0.5 592,737 - GFF1912 0.61 -1.1 592,737 - GFF1912 0.61 +0.8 592,737 - GFF1912 0.61 -0.6 592,737 - GFF1912 0.61 -0.9 592,737 - GFF1912 0.61 -0.0 592,737 - GFF1912 0.61 -0.6 592,737 - GFF1912 0.61 +1.7 592,772 + GFF1912 0.65 -0.5 592,772 + GFF1912 0.65 +0.2 592,773 - GFF1912 0.66 -0.3 592,773 - GFF1912 0.66 -0.8 592,884 - GFF1912 0.78 -0.4 592,884 - GFF1912 0.78 -0.3 592,884 - GFF1912 0.78 -0.1 593,076 + +0.2 593,120 + +0.5 593,157 + +0.3 593,157 + -0.5 593,158 - +0.1
Or see this region's nucleotide sequence