Strain Fitness in Variovorax sp. SCN45 around GFF1907

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1906 and GFF1907 are separated by 332 nucleotidesGFF1907 and GFF1908 are separated by 120 nucleotidesGFF1908 and GFF1909 are separated by 46 nucleotides GFF1906 - no description, at 586,837 to 587,694 GFF1906 GFF1907 - Transcriptional regulator, AraC family, at 588,027 to 588,974 GFF1907 GFF1908 - Short-chain dehydrogenases of various substrate specificities, at 589,095 to 589,904 GFF1908 GFF1909 - FIG00537389: hypothetical protein, at 589,951 to 590,607 GFF1909 Position (kb) 588 589Strain fitness (log2 ratio) -2 -1 0 1at 587.042 kb on + strand, within GFF1906at 587.043 kb on - strand, within GFF1906at 587.117 kb on + strand, within GFF1906at 587.118 kb on - strand, within GFF1906at 587.118 kb on - strand, within GFF1906at 587.183 kb on + strand, within GFF1906at 587.183 kb on + strand, within GFF1906at 587.184 kb on - strand, within GFF1906at 587.184 kb on - strand, within GFF1906at 587.195 kb on + strand, within GFF1906at 587.216 kb on + strand, within GFF1906at 587.216 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.310 kb on - strand, within GFF1906at 587.310 kb on - strand, within GFF1906at 587.315 kb on + strand, within GFF1906at 587.315 kb on + strand, within GFF1906at 587.315 kb on + strand, within GFF1906at 587.316 kb on - strand, within GFF1906at 587.316 kb on - strand, within GFF1906at 587.316 kb on - strand, within GFF1906at 587.447 kb on + strand, within GFF1906at 587.504 kb on + strand, within GFF1906at 587.504 kb on + strand, within GFF1906at 587.505 kb on - strand, within GFF1906at 587.505 kb on - strand, within GFF1906at 587.505 kb on - strand, within GFF1906at 587.505 kb on - strand, within GFF1906at 587.505 kb on - strand, within GFF1906at 587.546 kb on + strand, within GFF1906at 587.547 kb on - strand, within GFF1906at 587.780 kb on - strandat 587.780 kb on - strandat 587.794 kb on - strandat 587.794 kb on - strandat 587.794 kb on - strandat 587.979 kb on + strandat 587.979 kb on + strandat 587.979 kb on + strandat 588.003 kb on + strandat 588.004 kb on - strandat 588.004 kb on - strandat 588.129 kb on + strand, within GFF1907at 588.129 kb on + strand, within GFF1907at 588.129 kb on + strand, within GFF1907at 588.130 kb on - strand, within GFF1907at 588.204 kb on + strand, within GFF1907at 588.205 kb on - strand, within GFF1907at 588.205 kb on - strand, within GFF1907at 588.504 kb on + strand, within GFF1907at 588.579 kb on + strand, within GFF1907at 588.580 kb on - strand, within GFF1907at 588.580 kb on - strand, within GFF1907at 588.580 kb on - strand, within GFF1907at 588.666 kb on + strand, within GFF1907at 588.667 kb on - strand, within GFF1907at 588.667 kb on - strand, within GFF1907at 588.667 kb on - strand, within GFF1907at 588.980 kb on + strandat 588.981 kb on - strandat 588.981 kb on - strandat 588.981 kb on - strandat 589.017 kb on + strandat 589.019 kb on + strandat 589.020 kb on - strandat 589.029 kb on - strandat 589.159 kb on - strandat 589.462 kb on - strand, within GFF1908at 589.676 kb on + strand, within GFF1908at 589.694 kb on - strand, within GFF1908at 589.934 kb on + strandat 589.934 kb on + strandat 589.934 kb on + strandat 589.935 kb on - strandat 589.935 kb on - strandat 589.935 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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587,042 + GFF1906 0.24 +0.2
587,043 - GFF1906 0.24 -0.1
587,117 + GFF1906 0.33 +0.7
587,118 - GFF1906 0.33 +1.7
587,118 - GFF1906 0.33 -0.2
587,183 + GFF1906 0.40 -0.4
587,183 + GFF1906 0.40 +0.1
587,184 - GFF1906 0.40 -0.5
587,184 - GFF1906 0.40 -1.1
587,195 + GFF1906 0.42 -0.5
587,216 + GFF1906 0.44 -0.2
587,216 + GFF1906 0.44 +0.5
587,309 + GFF1906 0.55 -0.1
587,309 + GFF1906 0.55 -1.1
587,309 + GFF1906 0.55 -0.7
587,309 + GFF1906 0.55 -0.7
587,309 + GFF1906 0.55 -0.1
587,309 + GFF1906 0.55 +0.2
587,309 + GFF1906 0.55 -1.0
587,309 + GFF1906 0.55 -1.3
587,309 + GFF1906 0.55 -2.5
587,310 - GFF1906 0.55 -0.7
587,310 - GFF1906 0.55 -0.6
587,315 + GFF1906 0.56 -0.0
587,315 + GFF1906 0.56 +0.1
587,315 + GFF1906 0.56 +0.0
587,316 - GFF1906 0.56 -0.8
587,316 - GFF1906 0.56 -0.2
587,316 - GFF1906 0.56 +0.8
587,447 + GFF1906 0.71 -0.1
587,504 + GFF1906 0.78 -0.2
587,504 + GFF1906 0.78 -1.1
587,505 - GFF1906 0.78 -0.5
587,505 - GFF1906 0.78 -0.5
587,505 - GFF1906 0.78 -0.1
587,505 - GFF1906 0.78 +0.3
587,505 - GFF1906 0.78 -0.4
587,546 + GFF1906 0.83 +0.4
587,547 - GFF1906 0.83 -0.1
587,780 - -0.1
587,780 - -0.1
587,794 - -0.0
587,794 - -1.3
587,794 - -0.3
587,979 + +0.8
587,979 + +0.2
587,979 + -0.7
588,003 + -0.3
588,004 - -0.1
588,004 - +0.7
588,129 + GFF1907 0.11 -1.3
588,129 + GFF1907 0.11 -1.7
588,129 + GFF1907 0.11 -1.2
588,130 - GFF1907 0.11 -0.8
588,204 + GFF1907 0.19 -0.6
588,205 - GFF1907 0.19 -0.6
588,205 - GFF1907 0.19 -1.0
588,504 + GFF1907 0.50 +0.3
588,579 + GFF1907 0.58 +1.0
588,580 - GFF1907 0.58 -0.7
588,580 - GFF1907 0.58 +0.4
588,580 - GFF1907 0.58 -0.3
588,666 + GFF1907 0.67 -1.0
588,667 - GFF1907 0.68 +0.1
588,667 - GFF1907 0.68 +0.0
588,667 - GFF1907 0.68 -1.0
588,980 + -1.3
588,981 - +1.5
588,981 - -0.8
588,981 - +0.3
589,017 + +0.3
589,019 + -0.0
589,020 - -0.8
589,029 - +1.1
589,159 - -1.5
589,462 - GFF1908 0.45 -0.7
589,676 + GFF1908 0.72 -2.5
589,694 - GFF1908 0.74 -0.7
589,934 + +0.2
589,934 + +0.8
589,934 + -0.4
589,935 - -0.6
589,935 - -0.3
589,935 - -1.3

Or see this region's nucleotide sequence