Strain Fitness in Variovorax sp. SCN45 around GFF168

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
198,304	+		GFF167	0.74	-0.1
198,304	+		GFF167	0.74	+0.2
198,619	+		GFF167	0.83	-0.4
198,619	+		GFF167	0.83	-0.1
198,902	-				+0.5
199,120	+				-0.0
199,120	+				-1.2
199,120	+				-1.8
199,120	+				-1.6
199,120	+				+1.2
199,120	+				-1.2
199,120	+				-0.6
199,121	-				-0.8
199,121	-				-1.6
199,121	-				-0.9
199,290	+		GFF168	0.11	-0.8
199,290	+		GFF168	0.11	-1.1
199,291	-		GFF168	0.11	-0.8
199,291	-		GFF168	0.11	-1.9
199,291	-		GFF168	0.11	-2.2
199,299	+		GFF168	0.12	-1.6
199,299	+		GFF168	0.12	+0.2
199,300	-		GFF168	0.12	-3.6
199,305	+		GFF168	0.13	-1.8
199,305	+		GFF168	0.13	-0.6
199,305	+		GFF168	0.13	+0.2
199,305	+		GFF168	0.13	-0.8
199,306	-		GFF168	0.13	-1.1
199,306	-		GFF168	0.13	-1.8
199,306	-		GFF168	0.13	-2.2
199,307	-		GFF168	0.13	-2.9
199,320	+		GFF168	0.15	-0.6
199,321	-		GFF168	0.15	-3.7
199,486	-		GFF168	0.34	-2.3
199,531	-		GFF168	0.39	-1.8
199,531	-		GFF168	0.39	-2.3
199,635	+		GFF168	0.51	-0.6
199,635	+		GFF168	0.51	+0.2
199,710	+		GFF168	0.60	-1.6
199,710	+		GFF168	0.60	-0.6
199,710	+		GFF168	0.60	-4.3
199,722	+		GFF168	0.61	-1.1
199,723	-		GFF168	0.61	-3.9
199,758	+		GFF168	0.65	-2.6
199,761	+		GFF168	0.65	-3.1
199,761	+		GFF168	0.65	-2.3
199,761	+		GFF168	0.65	+0.9
199,761	+		GFF168	0.65	+0.4
199,761	+		GFF168	0.65	-1.8
199,761	+		GFF168	0.65	-3.3
199,761	+		GFF168	0.65	-0.9
199,761	+		GFF168	0.65	+1.2
199,762	-		GFF168	0.66	-2.1
199,762	-		GFF168	0.66	-1.6
199,773	+		GFF168	0.67	-1.2
199,774	-		GFF168	0.67	-1.8
199,893	+		GFF168	0.81	-0.8
199,894	-		GFF168	0.81	-1.8
200,043	+				-1.9
200,044	-				-1.7
200,175	+		GFF169	0.20	-1.0
200,175	+		GFF169	0.20	-0.7
200,175	+		GFF169	0.20	-0.9
200,175	+		GFF169	0.20	-0.9
200,175	+		GFF169	0.20	+0.5
200,175	+		GFF169	0.20	-0.4
200,176	-		GFF169	0.20	-0.7
200,176	-		GFF169	0.20	-1.7
200,176	-		GFF169	0.20	-1.3
200,303	+		GFF169	0.41	-1.4
200,303	+		GFF169	0.41	-0.6
200,303	+		GFF169	0.41	-1.1
200,303	+		GFF169	0.41	+0.8
200,304	-		GFF169	0.41	-1.7
200,304	-		GFF169	0.41	-1.3
200,304	-		GFF169	0.41	-0.6
200,321	+		GFF169	0.44	-0.8
200,322	-		GFF169	0.44	-0.7
200,322	-		GFF169	0.44	-1.0
200,322	-		GFF169	0.44	-0.8
200,334	+		GFF169	0.46	-0.1
200,471	+		GFF169	0.69	-0.9
200,471	+		GFF169	0.69	-0.7
200,471	+		GFF169	0.69	-0.3
200,471	+		GFF169	0.69	-1.5
200,471	+		GFF169	0.69	-1.3
200,471	+		GFF169	0.69	-0.9
200,471	+		GFF169	0.69	-1.8
200,471	+		GFF169	0.69	-1.3
200,472	-		GFF169	0.69	-0.3
200,472	-		GFF169	0.69	-0.1
200,472	-		GFF169	0.69	+0.7
200,526	+		GFF169	0.78	-0.7
200,526	+		GFF169	0.78	-1.1
200,526	+		GFF169	0.78	-0.6
200,527	-		GFF169	0.78	-0.3
200,594	+		GFF169	0.89	-0.2
200,594	+		GFF169	0.89	-0.4
200,594	+		GFF169	0.89	-1.9
200,594	+		GFF169	0.89	-1.7
200,595	-		GFF169	0.89	-1.1
200,595	-		GFF169	0.89	-1.6
200,595	-		GFF169	0.89	-1.0
200,595	-		GFF169	0.89	-0.8
200,931	+		GFF170	0.23	-0.2
200,931	+		GFF170	0.23	-0.7
200,932	-		GFF170	0.23	-0.3
200,932	-		GFF170	0.23	-0.8
200,932	-		GFF170	0.23	+3.6
200,946	+		GFF170	0.24	-1.1
200,947	-		GFF170	0.24	-1.1