Strain Fitness in Variovorax sp. SCN45 around GFF1523

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
118,618	+		GFF1522	0.67	-0.7
118,618	+		GFF1522	0.67	-0.8
118,726	+		GFF1522	0.71	-1.6
118,726	+		GFF1522	0.71	+0.3
118,727	-		GFF1522	0.72	+0.3
118,727	-		GFF1522	0.72	-0.4
118,747	+		GFF1522	0.72	-1.8
118,747	+		GFF1522	0.72	-0.9
118,747	+		GFF1522	0.72	+1.6
118,796	-		GFF1522	0.74	+0.1
118,796	-		GFF1522	0.74	-0.0
118,796	-		GFF1522	0.74	+0.2
118,822	+		GFF1522	0.75	+0.0
119,077	+		GFF1522	0.86	-0.4
119,077	+		GFF1522	0.86	+0.5
119,077	+		GFF1522	0.86	-0.8
119,077	+		GFF1522	0.86	-0.0
119,077	+		GFF1522	0.86	-0.2
119,077	+		GFF1522	0.86	-0.1
119,077	+		GFF1522	0.86	+0.4
119,078	-		GFF1522	0.86	-0.9
119,078	-		GFF1522	0.86	-0.1
119,078	-		GFF1522	0.86	-0.7
119,078	-		GFF1522	0.86	-0.7
119,078	-		GFF1522	0.86	-1.5
119,152	+		GFF1522	0.89	-0.5
119,152	+		GFF1522	0.89	-0.4
119,152	+		GFF1522	0.89	-0.4
119,152	+		GFF1522	0.89	+1.3
119,153	-		GFF1522	0.89	+1.1
119,153	-		GFF1522	0.89	+0.2
119,934	-		GFF1523	0.45	+0.1
119,934	-		GFF1523	0.45	+0.0
119,934	-		GFF1523	0.45	+0.4
120,517	+				+0.1
120,517	+				-0.5
120,517	+				+0.3
120,518	-				+0.8
120,518	-				-1.7
120,518	-				-0.6
120,518	-				-0.9
120,518	-				-0.8
120,544	+		GFF1524	0.10	-0.2
120,545	-		GFF1524	0.10	-0.9
120,545	-		GFF1524	0.10	+0.2
120,754	+		GFF1524	0.51	+1.1
120,755	-		GFF1524	0.51	-1.0
120,961	+				-1.4
120,961	+				-0.3
120,962	-				-0.4
121,038	+				+0.1
121,038	+				+1.1
121,077	+				+0.7
121,077	+				+0.4
121,077	+				+0.1
121,077	+				-0.4
121,077	+				-0.0
121,078	-				+0.3
121,078	-				+1.6
121,078	-				-2.5
121,078	-				+0.2
121,078	-				+0.4
121,078	-				-0.9
121,166	+				-1.4
121,166	+				-0.2
121,244	+		GFF1525	0.15	-0.2
121,244	+		GFF1525	0.15	-1.1
121,244	+		GFF1525	0.15	-1.2
121,244	+		GFF1525	0.15	+0.1
121,244	+		GFF1525	0.15	-0.3
121,244	+		GFF1525	0.15	-0.2
121,244	+		GFF1525	0.15	+0.0
121,244	+		GFF1525	0.15	+0.4
121,244	+		GFF1525	0.15	+0.3
121,245	-		GFF1525	0.15	-0.1
121,245	-		GFF1525	0.15	-1.3
121,245	-		GFF1525	0.15	+0.1
121,245	-		GFF1525	0.15	-1.5
121,245	-		GFF1525	0.15	-0.2
121,245	-		GFF1525	0.15	+0.1
121,245	-		GFF1525	0.15	+0.4
121,245	-		GFF1525	0.15	-0.4
121,245	-		GFF1525	0.15	+1.2
121,245	-		GFF1525	0.15	+0.6
121,245	-		GFF1525	0.15	-1.0
121,245	-		GFF1525	0.15	-0.8
121,245	-		GFF1525	0.15	-0.7
121,308	-		GFF1525	0.26	+0.9