Strain Fitness in Variovorax sp. SCN45 around GFF1519

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
112,998	+		GFF1517	0.32	+0.3
112,999	-		GFF1517	0.32	-0.1
113,094	+		GFF1517	0.49	-0.3
113,094	+		GFF1517	0.49	+0.6
113,094	+		GFF1517	0.49	+0.1
113,280	+		GFF1517	0.82	+1.1
113,486	+		GFF1518	0.12	+0.1
113,487	-		GFF1518	0.12	-2.8
113,814	-		GFF1518	0.81	-0.1
113,814	-		GFF1518	0.81	-0.4
113,817	+		GFF1518	0.82	-0.4
113,817	+		GFF1518	0.82	+0.3
113,817	+		GFF1518	0.82	-0.9
113,818	-		GFF1518	0.82	+0.6
113,818	-		GFF1518	0.82	-0.5
113,818	-		GFF1518	0.82	-0.4
113,818	-		GFF1518	0.82	-0.4
113,818	-		GFF1518	0.82	+0.2
113,818	-		GFF1518	0.82	-1.2
113,818	-		GFF1518	0.82	-1.5
113,956	+				+0.2
114,103	+		GFF1519	0.20	-0.4
114,103	+		GFF1519	0.20	-0.3
114,202	+		GFF1519	0.30	-0.1
114,203	-		GFF1519	0.30	+0.6
114,203	-		GFF1519	0.30	-0.2
114,203	-		GFF1519	0.30	-0.9
114,313	+		GFF1519	0.41	-0.2
114,313	+		GFF1519	0.41	-1.3
114,313	+		GFF1519	0.41	-0.2
114,476	-		GFF1519	0.58	+0.9
114,709	+		GFF1519	0.81	+0.3
114,709	+		GFF1519	0.81	-0.4
114,710	-		GFF1519	0.81	+0.1
114,884	+				+1.0
114,884	+				-0.4
114,885	-				-0.2
114,997	-				-0.1
115,004	+				+0.3
115,005	-				-0.6
115,005	-				-0.6
115,097	+				-0.7
115,205	+		GFF1520	0.19	+0.5
115,235	+		GFF1520	0.23	-1.9
115,235	+		GFF1520	0.23	-0.2
115,235	+		GFF1520	0.23	-1.4
115,236	-		GFF1520	0.23	-0.4
115,236	-		GFF1520	0.23	+1.6
115,425	-		GFF1520	0.47	-0.9
115,425	-		GFF1520	0.47	+0.9
115,554	-		GFF1520	0.63	-0.5
115,595	+		GFF1520	0.69	-0.5
115,595	+		GFF1520	0.69	-1.4
115,595	+		GFF1520	0.69	-0.6
115,595	+		GFF1520	0.69	+0.1
115,595	+		GFF1520	0.69	-0.9
115,595	+		GFF1520	0.69	-1.3
115,595	+		GFF1520	0.69	-0.8
115,595	+		GFF1520	0.69	-0.8
115,595	+		GFF1520	0.69	-1.5
115,596	-		GFF1520	0.69	-0.4
115,596	-		GFF1520	0.69	-0.5
115,596	-		GFF1520	0.69	+0.3
115,596	-		GFF1520	0.69	-0.4
115,596	-		GFF1520	0.69	-0.4
115,596	-		GFF1520	0.69	-0.2
115,822	-				-0.7
115,822	-				-1.5