Strain Fitness in Variovorax sp. SCN45 around GFF1385

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1384 and GFF1385 are separated by 61 nucleotidesGFF1385 and GFF1386 are separated by 102 nucleotides GFF1384 - Nitrilotriacetate monooxygenase component A (EC 1.14.13.-), at 730,027 to 731,358 GFF1384 GFF1385 - Multidrug resistance transporter, Bcr/CflA family, at 731,420 to 732,634 GFF1385 GFF1386 - Uncharacterized transporter YebQ, major facilitator superfamily (MFS), at 732,737 to 734,095 GFF1386 Position (kb) 731 732 733Strain fitness (log2 ratio) -2 -1 0 1 2at 730.486 kb on + strand, within GFF1384at 730.486 kb on + strand, within GFF1384at 730.486 kb on + strand, within GFF1384at 730.487 kb on - strand, within GFF1384at 730.507 kb on + strand, within GFF1384at 730.508 kb on - strand, within GFF1384at 730.650 kb on + strand, within GFF1384at 730.651 kb on - strand, within GFF1384at 730.783 kb on + strand, within GFF1384at 730.924 kb on + strand, within GFF1384at 730.925 kb on - strand, within GFF1384at 731.108 kb on - strand, within GFF1384at 731.287 kb on + strandat 731.287 kb on + strandat 731.288 kb on - strandat 731.288 kb on - strandat 731.298 kb on + strandat 731.298 kb on + strandat 731.298 kb on + strandat 731.298 kb on + strandat 731.298 kb on + strandat 731.298 kb on + strandat 731.299 kb on - strandat 731.299 kb on - strandat 731.299 kb on - strandat 731.299 kb on - strandat 731.299 kb on - strandat 731.356 kb on + strandat 731.357 kb on - strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.606 kb on + strand, within GFF1385at 731.607 kb on - strand, within GFF1385at 731.648 kb on + strand, within GFF1385at 731.648 kb on + strand, within GFF1385at 731.648 kb on + strand, within GFF1385at 731.648 kb on + strand, within GFF1385at 731.649 kb on - strand, within GFF1385at 732.029 kb on + strand, within GFF1385at 732.056 kb on + strand, within GFF1385at 732.107 kb on + strand, within GFF1385at 732.107 kb on + strand, within GFF1385at 732.108 kb on - strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.308 kb on + strand, within GFF1385at 732.309 kb on - strand, within GFF1385at 732.309 kb on - strand, within GFF1385at 732.353 kb on + strand, within GFF1385at 732.354 kb on - strand, within GFF1385at 732.354 kb on - strand, within GFF1385at 732.685 kb on - strandat 732.685 kb on - strandat 732.863 kb on + strandat 732.935 kb on + strand, within GFF1386at 732.935 kb on + strand, within GFF1386at 732.936 kb on - strand, within GFF1386at 732.936 kb on - strand, within GFF1386at 733.082 kb on + strand, within GFF1386at 733.082 kb on + strand, within GFF1386at 733.082 kb on + strand, within GFF1386at 733.082 kb on + strand, within GFF1386at 733.083 kb on - strand, within GFF1386at 733.083 kb on - strand, within GFF1386at 733.083 kb on - strand, within GFF1386at 733.083 kb on - strand, within GFF1386at 733.455 kb on - strand, within GFF1386at 733.574 kb on + strand, within GFF1386at 733.574 kb on + strand, within GFF1386at 733.574 kb on - strand, within GFF1386at 733.575 kb on - strand, within GFF1386at 733.575 kb on - strand, within GFF1386

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
remove
730,486 + GFF1384 0.34 -0.8
730,486 + GFF1384 0.34 -1.6
730,486 + GFF1384 0.34 -0.3
730,487 - GFF1384 0.35 -0.1
730,507 + GFF1384 0.36 -1.3
730,508 - GFF1384 0.36 -0.6
730,650 + GFF1384 0.47 -0.0
730,651 - GFF1384 0.47 -0.7
730,783 + GFF1384 0.57 -0.6
730,924 + GFF1384 0.67 +0.3
730,925 - GFF1384 0.67 +0.5
731,108 - GFF1384 0.81 -0.7
731,287 + -1.1
731,287 + +0.3
731,288 - +0.1
731,288 - -1.4
731,298 + -0.4
731,298 + -0.4
731,298 + -1.6
731,298 + -0.7
731,298 + -0.7
731,298 + -0.4
731,299 - -1.1
731,299 - -0.2
731,299 - +0.4
731,299 - -1.1
731,299 - -0.2
731,356 + +1.0
731,357 - -0.1
731,498 + +0.2
731,498 + -0.4
731,498 + -1.3
731,498 + +0.4
731,498 + -1.3
731,498 + -0.7
731,498 + -0.2
731,499 - +0.7
731,499 - +0.2
731,499 - -0.0
731,499 - -0.5
731,499 - -0.3
731,499 - -1.9
731,499 - -1.0
731,606 + GFF1385 0.15 +0.5
731,607 - GFF1385 0.15 +0.5
731,648 + GFF1385 0.19 -0.0
731,648 + GFF1385 0.19 -0.7
731,648 + GFF1385 0.19 +0.1
731,648 + GFF1385 0.19 -0.4
731,649 - GFF1385 0.19 -1.0
732,029 + GFF1385 0.50 -0.3
732,056 + GFF1385 0.52 -0.0
732,107 + GFF1385 0.57 +1.7
732,107 + GFF1385 0.57 -0.1
732,108 - GFF1385 0.57 -0.6
732,164 + GFF1385 0.61 -0.1
732,164 + GFF1385 0.61 -0.6
732,164 + GFF1385 0.61 -1.8
732,164 + GFF1385 0.61 +1.0
732,164 + GFF1385 0.61 +0.7
732,164 + GFF1385 0.61 -0.2
732,164 + GFF1385 0.61 +0.2
732,164 + GFF1385 0.61 +0.7
732,165 - GFF1385 0.61 +0.1
732,165 - GFF1385 0.61 +0.5
732,165 - GFF1385 0.61 -0.2
732,165 - GFF1385 0.61 -1.6
732,165 - GFF1385 0.61 +0.2
732,165 - GFF1385 0.61 -0.2
732,165 - GFF1385 0.61 -0.7
732,165 - GFF1385 0.61 +0.1
732,165 - GFF1385 0.61 +1.3
732,165 - GFF1385 0.61 -0.3
732,308 + GFF1385 0.73 +0.3
732,309 - GFF1385 0.73 +0.3
732,309 - GFF1385 0.73 -0.0
732,353 + GFF1385 0.77 +0.7
732,354 - GFF1385 0.77 +1.0
732,354 - GFF1385 0.77 -0.5
732,685 - -1.2
732,685 - +2.0
732,863 + -2.7
732,935 + GFF1386 0.15 +0.6
732,935 + GFF1386 0.15 -2.3
732,936 - GFF1386 0.15 -1.3
732,936 - GFF1386 0.15 -1.2
733,082 + GFF1386 0.25 -0.2
733,082 + GFF1386 0.25 -0.9
733,082 + GFF1386 0.25 -0.6
733,082 + GFF1386 0.25 -0.5
733,083 - GFF1386 0.25 -2.0
733,083 - GFF1386 0.25 -0.4
733,083 - GFF1386 0.25 +0.2
733,083 - GFF1386 0.25 -1.2
733,455 - GFF1386 0.53 -1.0
733,574 + GFF1386 0.62 -0.3
733,574 + GFF1386 0.62 -1.0
733,574 - GFF1386 0.62 -0.4
733,575 - GFF1386 0.62 -1.7
733,575 - GFF1386 0.62 -0.1

Or see this region's nucleotide sequence