Strain Fitness in Variovorax sp. SCN45 around GFF1242

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1241 and GFF1242 are separated by 44 nucleotidesGFF1242 and GFF1243 are separated by 195 nucleotides GFF1241 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) periplasmic (secreted in GramPositives), at 559,964 to 561,175 GFF1241 GFF1242 - hypothetical protein, at 561,220 to 562,743 GFF1242 GFF1243 - transglutaminase, N-terminal domain protein, at 562,939 to 563,847 GFF1243 Position (kb) 561 562 563Strain fitness (log2 ratio) -2 -1 0 1 2 3at 560.392 kb on + strand, within GFF1241at 560.392 kb on + strand, within GFF1241at 560.393 kb on - strand, within GFF1241at 560.492 kb on + strand, within GFF1241at 560.493 kb on - strand, within GFF1241at 560.583 kb on - strand, within GFF1241at 560.583 kb on - strand, within GFF1241at 560.583 kb on - strand, within GFF1241at 560.583 kb on - strand, within GFF1241at 560.606 kb on + strand, within GFF1241at 560.606 kb on + strand, within GFF1241at 560.607 kb on - strand, within GFF1241at 560.607 kb on - strand, within GFF1241at 560.607 kb on - strand, within GFF1241at 560.768 kb on + strand, within GFF1241at 560.819 kb on + strand, within GFF1241at 560.819 kb on + strand, within GFF1241at 560.819 kb on + strand, within GFF1241at 560.820 kb on - strand, within GFF1241at 560.820 kb on - strand, within GFF1241at 560.820 kb on - strand, within GFF1241at 560.820 kb on - strand, within GFF1241at 560.864 kb on + strand, within GFF1241at 560.864 kb on + strand, within GFF1241at 560.864 kb on + strand, within GFF1241at 560.864 kb on + strand, within GFF1241at 560.865 kb on - strand, within GFF1241at 560.865 kb on - strand, within GFF1241at 560.865 kb on - strand, within GFF1241at 561.054 kb on - strandat 561.054 kb on - strandat 561.173 kb on + strandat 561.317 kb on + strandat 561.318 kb on - strandat 561.512 kb on + strand, within GFF1242at 561.512 kb on + strand, within GFF1242at 561.512 kb on + strand, within GFF1242at 561.512 kb on + strand, within GFF1242at 561.512 kb on + strand, within GFF1242at 561.512 kb on + strand, within GFF1242at 561.512 kb on + strand, within GFF1242at 561.512 kb on + strand, within GFF1242at 561.513 kb on - strand, within GFF1242at 561.513 kb on - strand, within GFF1242at 561.539 kb on + strand, within GFF1242at 561.539 kb on + strand, within GFF1242at 561.539 kb on + strand, within GFF1242at 561.539 kb on + strand, within GFF1242at 561.539 kb on + strand, within GFF1242at 561.539 kb on + strand, within GFF1242at 561.539 kb on + strand, within GFF1242at 561.539 kb on + strand, within GFF1242at 561.540 kb on - strand, within GFF1242at 561.540 kb on - strand, within GFF1242at 561.540 kb on - strand, within GFF1242at 561.540 kb on - strand, within GFF1242at 561.540 kb on - strand, within GFF1242at 561.540 kb on - strand, within GFF1242at 561.710 kb on + strand, within GFF1242at 561.710 kb on + strand, within GFF1242at 561.711 kb on - strand, within GFF1242at 561.872 kb on + strand, within GFF1242at 561.872 kb on + strand, within GFF1242at 561.873 kb on - strand, within GFF1242at 561.873 kb on - strand, within GFF1242at 561.873 kb on - strand, within GFF1242at 561.873 kb on - strand, within GFF1242at 561.977 kb on + strand, within GFF1242at 562.029 kb on - strand, within GFF1242at 562.029 kb on - strand, within GFF1242at 562.067 kb on - strand, within GFF1242at 562.082 kb on + strand, within GFF1242at 562.082 kb on + strand, within GFF1242at 562.082 kb on + strand, within GFF1242at 562.083 kb on - strand, within GFF1242at 562.083 kb on - strand, within GFF1242at 562.083 kb on - strand, within GFF1242at 562.109 kb on + strand, within GFF1242at 562.109 kb on + strand, within GFF1242at 562.109 kb on + strand, within GFF1242at 562.109 kb on + strand, within GFF1242at 562.110 kb on - strand, within GFF1242at 562.110 kb on - strand, within GFF1242at 562.110 kb on - strand, within GFF1242at 562.110 kb on - strand, within GFF1242at 562.110 kb on - strand, within GFF1242at 562.110 kb on - strand, within GFF1242at 562.110 kb on - strand, within GFF1242at 562.271 kb on + strand, within GFF1242at 562.271 kb on + strand, within GFF1242at 562.272 kb on - strand, within GFF1242at 562.272 kb on - strand, within GFF1242at 562.274 kb on + strand, within GFF1242at 562.274 kb on + strand, within GFF1242at 562.274 kb on + strand, within GFF1242at 562.274 kb on + strand, within GFF1242at 562.274 kb on + strand, within GFF1242at 562.275 kb on - strand, within GFF1242at 562.275 kb on - strand, within GFF1242at 562.275 kb on - strand, within GFF1242at 562.275 kb on - strand, within GFF1242at 562.275 kb on - strand, within GFF1242at 562.275 kb on - strand, within GFF1242at 562.275 kb on - strand, within GFF1242at 562.286 kb on + strand, within GFF1242at 562.286 kb on + strand, within GFF1242at 562.287 kb on - strand, within GFF1242at 562.287 kb on - strand, within GFF1242at 562.287 kb on - strand, within GFF1242at 562.287 kb on - strand, within GFF1242at 562.326 kb on - strand, within GFF1242at 562.388 kb on + strand, within GFF1242at 562.388 kb on + strand, within GFF1242at 562.388 kb on + strand, within GFF1242at 562.388 kb on + strand, within GFF1242at 562.389 kb on - strand, within GFF1242at 562.389 kb on - strand, within GFF1242at 562.389 kb on - strand, within GFF1242at 562.389 kb on - strand, within GFF1242at 562.434 kb on - strand, within GFF1242at 562.434 kb on - strand, within GFF1242at 562.434 kb on - strand, within GFF1242at 562.434 kb on - strand, within GFF1242at 562.434 kb on - strand, within GFF1242at 562.488 kb on + strand, within GFF1242at 562.489 kb on - strand, within GFF1242at 562.554 kb on + strand, within GFF1242at 562.555 kb on - strand, within GFF1242at 562.828 kb on + strandat 562.828 kb on + strandat 562.829 kb on - strandat 562.829 kb on - strandat 562.853 kb on + strandat 562.853 kb on + strandat 562.853 kb on + strandat 562.853 kb on + strandat 562.853 kb on + strandat 562.854 kb on - strandat 562.871 kb on + strandat 562.985 kb on + strandat 562.985 kb on + strandat 562.985 kb on + strandat 562.985 kb on + strandat 562.985 kb on + strandat 562.985 kb on + strandat 562.986 kb on - strandat 562.986 kb on - strandat 562.986 kb on - strandat 562.986 kb on - strandat 563.004 kb on - strandat 563.126 kb on + strand, within GFF1243at 563.127 kb on - strand, within GFF1243at 563.127 kb on - strand, within GFF1243at 563.127 kb on - strand, within GFF1243at 563.127 kb on - strand, within GFF1243at 563.127 kb on - strand, within GFF1243at 563.210 kb on + strand, within GFF1243at 563.210 kb on + strand, within GFF1243at 563.211 kb on - strand, within GFF1243at 563.211 kb on - strand, within GFF1243at 563.211 kb on - strand, within GFF1243at 563.211 kb on - strand, within GFF1243at 563.211 kb on - strand, within GFF1243at 563.211 kb on - strand, within GFF1243at 563.211 kb on - strand, within GFF1243at 563.216 kb on + strand, within GFF1243at 563.216 kb on + strand, within GFF1243at 563.216 kb on + strand, within GFF1243at 563.216 kb on + strand, within GFF1243at 563.216 kb on + strand, within GFF1243at 563.216 kb on + strand, within GFF1243at 563.217 kb on - strand, within GFF1243at 563.217 kb on - strand, within GFF1243at 563.217 kb on - strand, within GFF1243at 563.279 kb on + strand, within GFF1243at 563.279 kb on + strand, within GFF1243at 563.279 kb on + strand, within GFF1243at 563.280 kb on - strand, within GFF1243at 563.354 kb on + strand, within GFF1243at 563.354 kb on + strand, within GFF1243at 563.354 kb on + strand, within GFF1243at 563.354 kb on + strand, within GFF1243at 563.355 kb on - strand, within GFF1243at 563.355 kb on - strand, within GFF1243at 563.355 kb on - strand, within GFF1243at 563.355 kb on - strand, within GFF1243at 563.355 kb on - strand, within GFF1243at 563.492 kb on + strand, within GFF1243at 563.492 kb on + strand, within GFF1243at 563.492 kb on + strand, within GFF1243at 563.493 kb on - strand, within GFF1243at 563.493 kb on - strand, within GFF1243at 563.493 kb on - strand, within GFF1243

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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560,392 + GFF1241 0.35 -1.6
560,392 + GFF1241 0.35 -0.5
560,393 - GFF1241 0.35 -1.3
560,492 + GFF1241 0.44 -0.5
560,493 - GFF1241 0.44 -0.2
560,583 - GFF1241 0.51 -0.1
560,583 - GFF1241 0.51 +0.9
560,583 - GFF1241 0.51 -0.0
560,583 - GFF1241 0.51 -0.6
560,606 + GFF1241 0.53 -1.1
560,606 + GFF1241 0.53 -0.1
560,607 - GFF1241 0.53 +0.2
560,607 - GFF1241 0.53 -0.2
560,607 - GFF1241 0.53 -0.6
560,768 + GFF1241 0.66 +0.7
560,819 + GFF1241 0.71 -0.6
560,819 + GFF1241 0.71 +0.2
560,819 + GFF1241 0.71 -1.9
560,820 - GFF1241 0.71 +0.2
560,820 - GFF1241 0.71 -1.0
560,820 - GFF1241 0.71 +0.7
560,820 - GFF1241 0.71 -0.7
560,864 + GFF1241 0.74 -0.6
560,864 + GFF1241 0.74 -0.3
560,864 + GFF1241 0.74 -0.2
560,864 + GFF1241 0.74 -1.1
560,865 - GFF1241 0.74 -0.3
560,865 - GFF1241 0.74 -0.2
560,865 - GFF1241 0.74 -0.2
561,054 - +0.2
561,054 - -1.0
561,173 + -0.6
561,317 + +0.4
561,318 - +0.5
561,512 + GFF1242 0.19 -0.4
561,512 + GFF1242 0.19 +0.0
561,512 + GFF1242 0.19 -0.1
561,512 + GFF1242 0.19 -1.1
561,512 + GFF1242 0.19 -0.3
561,512 + GFF1242 0.19 -1.1
561,512 + GFF1242 0.19 +0.3
561,512 + GFF1242 0.19 -0.4
561,513 - GFF1242 0.19 -1.6
561,513 - GFF1242 0.19 +0.3
561,539 + GFF1242 0.21 -1.3
561,539 + GFF1242 0.21 -0.1
561,539 + GFF1242 0.21 -1.2
561,539 + GFF1242 0.21 -0.6
561,539 + GFF1242 0.21 -0.8
561,539 + GFF1242 0.21 -0.3
561,539 + GFF1242 0.21 +0.3
561,539 + GFF1242 0.21 -0.5
561,540 - GFF1242 0.21 -0.4
561,540 - GFF1242 0.21 -0.4
561,540 - GFF1242 0.21 -0.4
561,540 - GFF1242 0.21 -0.4
561,540 - GFF1242 0.21 +0.1
561,540 - GFF1242 0.21 -0.5
561,710 + GFF1242 0.32 -0.3
561,710 + GFF1242 0.32 +0.7
561,711 - GFF1242 0.32 +0.5
561,872 + GFF1242 0.43 -0.0
561,872 + GFF1242 0.43 -0.2
561,873 - GFF1242 0.43 -0.4
561,873 - GFF1242 0.43 -1.7
561,873 - GFF1242 0.43 -0.1
561,873 - GFF1242 0.43 -0.3
561,977 + GFF1242 0.50 -1.1
562,029 - GFF1242 0.53 -0.4
562,029 - GFF1242 0.53 -0.1
562,067 - GFF1242 0.56 -1.5
562,082 + GFF1242 0.57 +0.0
562,082 + GFF1242 0.57 -1.3
562,082 + GFF1242 0.57 +0.1
562,083 - GFF1242 0.57 -2.0
562,083 - GFF1242 0.57 -2.3
562,083 - GFF1242 0.57 -0.3
562,109 + GFF1242 0.58 +0.1
562,109 + GFF1242 0.58 -0.3
562,109 + GFF1242 0.58 -0.7
562,109 + GFF1242 0.58 -0.8
562,110 - GFF1242 0.58 +0.3
562,110 - GFF1242 0.58 -0.3
562,110 - GFF1242 0.58 +0.0
562,110 - GFF1242 0.58 -0.6
562,110 - GFF1242 0.58 -0.1
562,110 - GFF1242 0.58 -0.0
562,110 - GFF1242 0.58 -1.5
562,271 + GFF1242 0.69 +0.1
562,271 + GFF1242 0.69 -0.5
562,272 - GFF1242 0.69 -0.9
562,272 - GFF1242 0.69 -0.3
562,274 + GFF1242 0.69 +3.6
562,274 + GFF1242 0.69 -1.7
562,274 + GFF1242 0.69 +0.1
562,274 + GFF1242 0.69 +0.3
562,274 + GFF1242 0.69 +0.3
562,275 - GFF1242 0.69 -1.0
562,275 - GFF1242 0.69 -0.6
562,275 - GFF1242 0.69 -0.1
562,275 - GFF1242 0.69 +1.0
562,275 - GFF1242 0.69 +0.6
562,275 - GFF1242 0.69 -0.9
562,275 - GFF1242 0.69 +0.2
562,286 + GFF1242 0.70 +0.5
562,286 + GFF1242 0.70 +0.8
562,287 - GFF1242 0.70 +0.4
562,287 - GFF1242 0.70 -1.3
562,287 - GFF1242 0.70 +0.2
562,287 - GFF1242 0.70 +1.0
562,326 - GFF1242 0.73 +0.2
562,388 + GFF1242 0.77 -1.8
562,388 + GFF1242 0.77 +1.9
562,388 + GFF1242 0.77 -0.3
562,388 + GFF1242 0.77 -0.3
562,389 - GFF1242 0.77 +0.2
562,389 - GFF1242 0.77 -0.5
562,389 - GFF1242 0.77 -0.2
562,389 - GFF1242 0.77 +0.1
562,434 - GFF1242 0.80 -1.2
562,434 - GFF1242 0.80 -1.0
562,434 - GFF1242 0.80 +1.3
562,434 - GFF1242 0.80 -1.0
562,434 - GFF1242 0.80 -0.1
562,488 + GFF1242 0.83 -0.3
562,489 - GFF1242 0.83 -0.0
562,554 + GFF1242 0.88 +0.2
562,555 - GFF1242 0.88 +0.1
562,828 + -0.4
562,828 + +0.9
562,829 - -0.0
562,829 - -0.4
562,853 + +0.3
562,853 + -0.6
562,853 + -2.3
562,853 + -1.0
562,853 + +0.6
562,854 - +0.7
562,871 + +2.3
562,985 + -1.1
562,985 + +0.5
562,985 + +0.3
562,985 + -0.5
562,985 + +0.7
562,985 + +0.1
562,986 - -1.7
562,986 - -0.3
562,986 - +1.5
562,986 - +0.4
563,004 - -0.1
563,126 + GFF1243 0.21 -1.7
563,127 - GFF1243 0.21 -0.0
563,127 - GFF1243 0.21 -1.0
563,127 - GFF1243 0.21 -1.5
563,127 - GFF1243 0.21 +0.1
563,127 - GFF1243 0.21 -0.8
563,210 + GFF1243 0.30 +0.2
563,210 + GFF1243 0.30 +0.5
563,211 - GFF1243 0.30 +0.1
563,211 - GFF1243 0.30 -0.1
563,211 - GFF1243 0.30 -1.7
563,211 - GFF1243 0.30 +0.1
563,211 - GFF1243 0.30 +0.2
563,211 - GFF1243 0.30 -0.4
563,211 - GFF1243 0.30 +0.5
563,216 + GFF1243 0.30 -0.0
563,216 + GFF1243 0.30 -0.4
563,216 + GFF1243 0.30 -0.3
563,216 + GFF1243 0.30 -0.2
563,216 + GFF1243 0.30 -0.6
563,216 + GFF1243 0.30 -0.3
563,217 - GFF1243 0.31 -0.3
563,217 - GFF1243 0.31 -0.6
563,217 - GFF1243 0.31 +0.1
563,279 + GFF1243 0.37 -0.2
563,279 + GFF1243 0.37 -0.5
563,279 + GFF1243 0.37 -0.7
563,280 - GFF1243 0.38 -0.4
563,354 + GFF1243 0.46 -0.7
563,354 + GFF1243 0.46 +0.6
563,354 + GFF1243 0.46 +2.3
563,354 + GFF1243 0.46 +0.3
563,355 - GFF1243 0.46 +0.3
563,355 - GFF1243 0.46 -0.6
563,355 - GFF1243 0.46 -0.6
563,355 - GFF1243 0.46 -0.3
563,355 - GFF1243 0.46 +0.5
563,492 + GFF1243 0.61 -1.0
563,492 + GFF1243 0.61 +0.1
563,492 + GFF1243 0.61 +0.1
563,493 - GFF1243 0.61 -1.2
563,493 - GFF1243 0.61 +1.1
563,493 - GFF1243 0.61 -0.0

Or see this region's nucleotide sequence