Strain Fitness in Variovorax sp. SCN45 around GFF1179

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1177 and GFF1178 are separated by 23 nucleotidesGFF1178 and GFF1179 are separated by 6 nucleotidesGFF1179 and GFF1180 are separated by 1 nucleotidesGFF1180 and GFF1181 overlap by 4 nucleotides GFF1177 - Serine protease, at 493,480 to 494,967 GFF1177 GFF1178 - hypothetical protein, at 494,991 to 495,332 GFF1178 GFF1179 - no description, at 495,339 to 497,222 GFF1179 GFF1180 - hypothetical protein, at 497,224 to 497,913 GFF1180 GFF1181 - hypothetical protein, at 497,910 to 498,887 GFF1181 Position (kb) 495 496 497 498Strain fitness (log2 ratio) -2 -1 0 1 2at 495.214 kb on + strand, within GFF1178at 495.216 kb on + strand, within GFF1178at 495.405 kb on + strandat 495.406 kb on - strandat 495.453 kb on + strandat 495.772 kb on + strand, within GFF1179at 495.772 kb on + strand, within GFF1179at 495.772 kb on + strand, within GFF1179at 495.772 kb on + strand, within GFF1179at 495.773 kb on - strand, within GFF1179at 495.773 kb on - strand, within GFF1179at 495.773 kb on - strand, within GFF1179at 495.773 kb on - strand, within GFF1179at 496.048 kb on + strand, within GFF1179at 496.049 kb on - strand, within GFF1179at 496.049 kb on - strand, within GFF1179at 496.049 kb on - strand, within GFF1179at 496.069 kb on + strand, within GFF1179at 496.069 kb on + strand, within GFF1179at 496.077 kb on + strand, within GFF1179at 496.077 kb on + strand, within GFF1179at 496.135 kb on + strand, within GFF1179at 496.136 kb on - strand, within GFF1179at 496.136 kb on - strand, within GFF1179at 496.194 kb on + strand, within GFF1179at 496.194 kb on + strand, within GFF1179at 496.195 kb on - strand, within GFF1179at 496.195 kb on - strand, within GFF1179at 496.195 kb on - strand, within GFF1179at 496.258 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.268 kb on - strand, within GFF1179at 496.268 kb on - strand, within GFF1179at 496.268 kb on - strand, within GFF1179at 496.384 kb on + strand, within GFF1179at 496.465 kb on + strand, within GFF1179at 496.466 kb on - strand, within GFF1179at 496.466 kb on - strand, within GFF1179at 496.466 kb on - strand, within GFF1179at 496.576 kb on + strand, within GFF1179at 496.576 kb on + strand, within GFF1179at 496.577 kb on - strand, within GFF1179at 496.646 kb on - strand, within GFF1179at 496.687 kb on + strand, within GFF1179at 496.687 kb on + strand, within GFF1179at 496.687 kb on + strand, within GFF1179at 496.717 kb on + strand, within GFF1179at 496.718 kb on - strand, within GFF1179at 496.847 kb on - strand, within GFF1179at 496.870 kb on + strand, within GFF1179at 496.871 kb on - strand, within GFF1179at 496.871 kb on - strand, within GFF1179at 496.871 kb on - strand, within GFF1179at 496.984 kb on + strand, within GFF1179at 496.984 kb on + strand, within GFF1179at 496.985 kb on - strand, within GFF1179at 497.225 kb on + strandat 497.294 kb on + strand, within GFF1180at 497.294 kb on + strand, within GFF1180at 497.295 kb on - strand, within GFF1180at 497.295 kb on - strand, within GFF1180at 497.295 kb on - strand, within GFF1180at 497.298 kb on + strand, within GFF1180at 497.298 kb on + strand, within GFF1180at 497.298 kb on + strand, within GFF1180at 497.299 kb on - strand, within GFF1180at 497.299 kb on - strand, within GFF1180at 497.299 kb on - strand, within GFF1180at 497.299 kb on - strand, within GFF1180at 497.360 kb on + strand, within GFF1180at 497.360 kb on + strand, within GFF1180at 497.360 kb on + strand, within GFF1180at 497.360 kb on + strand, within GFF1180at 497.360 kb on + strand, within GFF1180at 497.360 kb on + strand, within GFF1180at 497.360 kb on + strand, within GFF1180at 497.360 kb on + strand, within GFF1180at 497.361 kb on - strand, within GFF1180at 497.361 kb on - strand, within GFF1180at 497.361 kb on - strand, within GFF1180at 497.361 kb on - strand, within GFF1180at 497.361 kb on - strand, within GFF1180at 497.361 kb on - strand, within GFF1180at 497.361 kb on - strand, within GFF1180at 497.603 kb on + strand, within GFF1180at 497.603 kb on + strand, within GFF1180at 497.604 kb on - strand, within GFF1180at 497.604 kb on - strand, within GFF1180at 498.072 kb on + strand, within GFF1181at 498.122 kb on + strand, within GFF1181at 498.123 kb on - strand, within GFF1181at 498.127 kb on + strand, within GFF1181at 498.127 kb on + strand, within GFF1181at 498.128 kb on - strand, within GFF1181at 498.128 kb on - strand, within GFF1181at 498.128 kb on - strand, within GFF1181at 498.178 kb on + strand, within GFF1181at 498.179 kb on - strand, within GFF1181

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
remove
495,214 + GFF1178 0.65 +1.0
495,216 + GFF1178 0.66 -0.2
495,405 + +0.4
495,406 - +0.3
495,453 + -0.3
495,772 + GFF1179 0.23 +0.5
495,772 + GFF1179 0.23 -0.5
495,772 + GFF1179 0.23 -0.8
495,772 + GFF1179 0.23 -0.3
495,773 - GFF1179 0.23 -0.1
495,773 - GFF1179 0.23 +0.1
495,773 - GFF1179 0.23 -0.7
495,773 - GFF1179 0.23 -1.8
496,048 + GFF1179 0.38 -0.6
496,049 - GFF1179 0.38 -0.3
496,049 - GFF1179 0.38 -0.0
496,049 - GFF1179 0.38 -0.8
496,069 + GFF1179 0.39 -0.0
496,069 + GFF1179 0.39 -0.1
496,077 + GFF1179 0.39 -0.7
496,077 + GFF1179 0.39 +0.0
496,135 + GFF1179 0.42 -0.3
496,136 - GFF1179 0.42 -1.0
496,136 - GFF1179 0.42 +0.3
496,194 + GFF1179 0.45 -0.9
496,194 + GFF1179 0.45 -1.5
496,195 - GFF1179 0.45 -0.6
496,195 - GFF1179 0.45 -2.0
496,195 - GFF1179 0.45 -0.1
496,258 + GFF1179 0.49 -1.7
496,267 + GFF1179 0.49 -0.3
496,267 + GFF1179 0.49 +0.5
496,267 + GFF1179 0.49 -0.1
496,267 + GFF1179 0.49 +1.0
496,267 + GFF1179 0.49 +0.0
496,267 + GFF1179 0.49 +0.3
496,268 - GFF1179 0.49 +0.4
496,268 - GFF1179 0.49 +0.2
496,268 - GFF1179 0.49 -1.7
496,384 + GFF1179 0.55 +1.0
496,465 + GFF1179 0.60 -0.2
496,466 - GFF1179 0.60 -0.5
496,466 - GFF1179 0.60 -0.2
496,466 - GFF1179 0.60 -0.5
496,576 + GFF1179 0.66 +0.1
496,576 + GFF1179 0.66 -0.3
496,577 - GFF1179 0.66 -0.3
496,646 - GFF1179 0.69 +0.3
496,687 + GFF1179 0.72 -0.7
496,687 + GFF1179 0.72 -0.5
496,687 + GFF1179 0.72 +0.1
496,717 + GFF1179 0.73 -1.6
496,718 - GFF1179 0.73 -0.3
496,847 - GFF1179 0.80 +0.3
496,870 + GFF1179 0.81 +0.0
496,871 - GFF1179 0.81 +0.2
496,871 - GFF1179 0.81 +0.7
496,871 - GFF1179 0.81 -0.2
496,984 + GFF1179 0.87 -0.4
496,984 + GFF1179 0.87 -1.0
496,985 - GFF1179 0.87 +0.6
497,225 + +0.5
497,294 + GFF1180 0.10 +0.6
497,294 + GFF1180 0.10 -0.7
497,295 - GFF1180 0.10 -0.4
497,295 - GFF1180 0.10 +0.3
497,295 - GFF1180 0.10 -0.7
497,298 + GFF1180 0.11 +0.5
497,298 + GFF1180 0.11 +0.9
497,298 + GFF1180 0.11 +0.2
497,299 - GFF1180 0.11 -1.7
497,299 - GFF1180 0.11 -0.2
497,299 - GFF1180 0.11 -0.0
497,299 - GFF1180 0.11 -0.2
497,360 + GFF1180 0.20 -0.8
497,360 + GFF1180 0.20 -0.1
497,360 + GFF1180 0.20 -0.7
497,360 + GFF1180 0.20 -0.5
497,360 + GFF1180 0.20 +0.6
497,360 + GFF1180 0.20 -0.1
497,360 + GFF1180 0.20 -2.0
497,360 + GFF1180 0.20 +0.2
497,361 - GFF1180 0.20 +0.1
497,361 - GFF1180 0.20 +0.3
497,361 - GFF1180 0.20 -0.1
497,361 - GFF1180 0.20 -1.0
497,361 - GFF1180 0.20 +0.4
497,361 - GFF1180 0.20 -1.2
497,361 - GFF1180 0.20 -1.0
497,603 + GFF1180 0.55 +0.3
497,603 + GFF1180 0.55 -0.3
497,604 - GFF1180 0.55 +0.9
497,604 - GFF1180 0.55 -0.2
498,072 + GFF1181 0.17 +2.3
498,122 + GFF1181 0.22 +1.3
498,123 - GFF1181 0.22 -1.7
498,127 + GFF1181 0.22 +1.3
498,127 + GFF1181 0.22 -0.4
498,128 - GFF1181 0.22 +0.6
498,128 - GFF1181 0.22 -0.2
498,128 - GFF1181 0.22 +0.1
498,178 + GFF1181 0.27 -2.6
498,179 - GFF1181 0.28 -0.6

Or see this region's nucleotide sequence