Strain Fitness in Variovorax sp. SCN45 around GFF7365

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7364 and GFF7365 are separated by 26 nucleotidesGFF7365 and GFF7366 are separated by 1 nucleotides GFF7364 - no description, at 11,406 to 12,509 GFF7364 GFF7365 - no description, at 12,536 to 13,021 GFF7365 GFF7366 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 13,023 to 14,591 GFF7366 Position (kb) 12 13 14Strain fitness (log2 ratio) -2 -1 0 1at 11.645 kb on - strand, within GFF7364at 11.645 kb on - strand, within GFF7364at 11.683 kb on + strand, within GFF7364at 12.169 kb on + strand, within GFF7364at 12.264 kb on + strand, within GFF7364at 12.265 kb on - strand, within GFF7364at 12.367 kb on + strand, within GFF7364at 12.368 kb on - strand, within GFF7364at 12.599 kb on + strand, within GFF7365at 12.599 kb on + strand, within GFF7365at 12.600 kb on - strand, within GFF7365at 12.600 kb on - strand, within GFF7365at 12.772 kb on - strand, within GFF7365at 12.879 kb on + strand, within GFF7365at 12.879 kb on + strand, within GFF7365at 12.879 kb on + strand, within GFF7365at 12.880 kb on - strand, within GFF7365at 13.363 kb on + strand, within GFF7366at 13.388 kb on - strand, within GFF7366at 13.477 kb on + strand, within GFF7366at 13.477 kb on + strand, within GFF7366at 13.477 kb on + strand, within GFF7366at 13.478 kb on - strand, within GFF7366at 13.478 kb on - strand, within GFF7366at 13.481 kb on - strand, within GFF7366at 13.481 kb on - strand, within GFF7366at 13.690 kb on + strand, within GFF7366at 13.690 kb on + strand, within GFF7366at 13.690 kb on + strand, within GFF7366at 13.690 kb on + strand, within GFF7366at 13.691 kb on - strand, within GFF7366at 13.691 kb on - strand, within GFF7366at 13.691 kb on - strand, within GFF7366at 13.692 kb on + strand, within GFF7366at 13.692 kb on + strand, within GFF7366at 13.692 kb on + strand, within GFF7366at 13.692 kb on + strand, within GFF7366at 13.693 kb on - strand, within GFF7366at 13.693 kb on - strand, within GFF7366at 13.769 kb on - strand, within GFF7366at 13.996 kb on + strand, within GFF7366at 13.996 kb on + strand, within GFF7366at 13.997 kb on - strand, within GFF7366

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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11,645 - GFF7364 0.22 -0.6
11,645 - GFF7364 0.22 -0.1
11,683 + GFF7364 0.25 +0.2
12,169 + GFF7364 0.69 +0.4
12,264 + GFF7364 0.78 -0.8
12,265 - GFF7364 0.78 +1.0
12,367 + GFF7364 0.87 +0.4
12,368 - GFF7364 0.87 -0.0
12,599 + GFF7365 0.13 -0.8
12,599 + GFF7365 0.13 -0.6
12,600 - GFF7365 0.13 -2.5
12,600 - GFF7365 0.13 +0.0
12,772 - GFF7365 0.49 -0.1
12,879 + GFF7365 0.71 -0.5
12,879 + GFF7365 0.71 -0.8
12,879 + GFF7365 0.71 -0.9
12,880 - GFF7365 0.71 -0.3
13,363 + GFF7366 0.22 +0.5
13,388 - GFF7366 0.23 -0.0
13,477 + GFF7366 0.29 +0.4
13,477 + GFF7366 0.29 -2.1
13,477 + GFF7366 0.29 -0.1
13,478 - GFF7366 0.29 +0.8
13,478 - GFF7366 0.29 +0.2
13,481 - GFF7366 0.29 -0.4
13,481 - GFF7366 0.29 -0.0
13,690 + GFF7366 0.43 +0.1
13,690 + GFF7366 0.43 -0.5
13,690 + GFF7366 0.43 -0.3
13,690 + GFF7366 0.43 +1.1
13,691 - GFF7366 0.43 +1.0
13,691 - GFF7366 0.43 +0.5
13,691 - GFF7366 0.43 -1.0
13,692 + GFF7366 0.43 -0.9
13,692 + GFF7366 0.43 -1.5
13,692 + GFF7366 0.43 +0.5
13,692 + GFF7366 0.43 -0.6
13,693 - GFF7366 0.43 +0.0
13,693 - GFF7366 0.43 -0.5
13,769 - GFF7366 0.48 -0.8
13,996 + GFF7366 0.62 -0.0
13,996 + GFF7366 0.62 -0.8
13,997 - GFF7366 0.62 -0.5

Or see this region's nucleotide sequence