Strain Fitness in Variovorax sp. SCN45 around GFF7342

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
9,322	-		GFF7340	0.49	-0.5
9,322	-		GFF7340	0.49	+1.7
9,427	-		GFF7340	0.59	-0.5
9,427	-		GFF7340	0.59	-2.1
9,594	+		GFF7340	0.74	-0.1
9,625	-		GFF7340	0.77	+0.8
9,625	-		GFF7340	0.77	+0.1
9,842	-				+0.1
9,975	+				+0.1
9,976	-				-0.1
9,976	-				+0.3
10,042	+				+0.2
10,043	-				+0.2
10,525	+		GFF7342	0.22	+1.9
10,552	+		GFF7342	0.24	+1.0
10,553	-		GFF7342	0.24	-0.8
11,020	+		GFF7342	0.56	-1.1
11,021	-		GFF7342	0.56	-0.3
11,021	-		GFF7342	0.56	+0.6
11,029	+		GFF7342	0.56	-0.3
11,029	+		GFF7342	0.56	+1.2
11,029	+		GFF7342	0.56	+0.2
11,443	+		GFF7342	0.85	-1.0
11,443	+		GFF7342	0.85	+0.7
11,443	+		GFF7342	0.85	-0.0
11,444	-		GFF7342	0.85	-2.3
11,617	+				+0.0
11,617	+				+0.4
11,741	+				+0.3
11,742	-				+1.2
11,856	+				+0.4
12,556	-		GFF7344	0.33	-0.7
12,605	+		GFF7344	0.38	+0.4
12,605	+		GFF7344	0.38	+0.6
12,606	-		GFF7344	0.38	+0.3