Strain Fitness in Variovorax sp. SCN45 around GFF7284

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
1,015	+		GFF7283	0.47	-0.6
1,015	+		GFF7283	0.47	-0.0
1,015	+		GFF7283	0.47	+0.2
1,016	-		GFF7283	0.47	+1.2
1,016	-		GFF7283	0.47	+1.5
1,307	-		GFF7283	0.64	-0.7
1,363	+		GFF7283	0.68	-0.2
1,636	+		GFF7283	0.84	-1.5
1,637	-		GFF7283	0.84	+0.9
1,787	-				+1.2
1,787	-				+0.5
1,803	-				-0.5
1,803	-				-1.3
1,810	+				+0.6
1,810	+				-0.5
1,810	+				-0.4
1,811	-				-2.2
1,811	-				-1.8
1,811	-				-0.3
1,811	-				-0.3
1,829	+				-1.5
1,903	+				-0.2
1,904	-				-0.2
1,920	+				+0.4
1,944	+				-1.4
1,944	+				-0.9
1,944	+				-0.5
1,944	+				+0.1
1,945	-				-0.3
2,017	-				-0.4
2,122	+		GFF7284	0.16	-1.6
2,152	+		GFF7284	0.19	-0.2
2,161	+		GFF7284	0.20	+0.0
2,161	+		GFF7284	0.20	-1.0
2,162	-		GFF7284	0.20	+1.0
2,162	-		GFF7284	0.20	+0.2
2,162	-		GFF7284	0.20	+0.9
2,162	-		GFF7284	0.20	-0.8
2,162	-		GFF7284	0.20	-0.5
2,162	-		GFF7284	0.20	-1.2
2,473	+		GFF7284	0.51	-0.3
2,474	-		GFF7284	0.51	-0.9
2,474	-		GFF7284	0.51	-0.2
2,474	-		GFF7284	0.51	-0.5
2,474	-		GFF7284	0.51	-0.8
2,474	-		GFF7284	0.51	-0.2
2,476	+		GFF7284	0.52	+0.2
2,476	+		GFF7284	0.52	+0.3
2,476	+		GFF7284	0.52	-0.1
2,476	+		GFF7284	0.52	+0.5
2,476	+		GFF7284	0.52	-0.3
2,476	+		GFF7284	0.52	-0.8
2,476	+		GFF7284	0.52	-0.2
2,476	+		GFF7284	0.52	-0.6
2,476	+		GFF7284	0.52	+1.0
2,476	+		GFF7284	0.52	-0.3
2,477	-		GFF7284	0.52	+0.1
2,477	-		GFF7284	0.52	-0.8
2,477	-		GFF7284	0.52	+2.0
2,564	+		GFF7284	0.60	-1.5
2,564	+		GFF7284	0.60	-0.0
2,565	-		GFF7284	0.60	+0.0
2,653	+		GFF7284	0.69	+1.0
2,653	+		GFF7284	0.69	+0.9
2,653	+		GFF7284	0.69	+0.6
2,653	+		GFF7284	0.69	-0.1
2,654	-		GFF7284	0.69	-0.2
2,654	-		GFF7284	0.69	+0.2
2,654	-		GFF7284	0.69	-0.5
2,854	+		GFF7284	0.89	-0.5
2,929	+				-0.1
2,929	+				-0.2
2,929	+				+1.1
2,929	+				-0.3
2,930	-				-1.7
3,204	-		GFF7285	0.26	-0.3
3,254	+		GFF7285	0.32	+0.2
3,254	+		GFF7285	0.32	-0.8
3,254	+		GFF7285	0.32	-0.5
3,255	-		GFF7285	0.32	+0.2
3,255	-		GFF7285	0.32	-0.7
3,255	-		GFF7285	0.32	+1.8
3,255	-		GFF7285	0.32	+0.2
3,255	-		GFF7285	0.32	+0.7
3,494	+		GFF7285	0.58	-1.2
3,494	+		GFF7285	0.58	+0.1
3,494	+		GFF7285	0.58	-0.7
3,494	+		GFF7285	0.58	+0.8
3,495	-		GFF7285	0.58	-0.5
3,495	-		GFF7285	0.58	+0.6
3,542	+		GFF7285	0.64	-0.3
3,542	+		GFF7285	0.64	-0.8
3,542	+		GFF7285	0.64	-1.0
3,542	+		GFF7285	0.64	+0.4
3,543	-		GFF7285	0.64	-0.5
3,543	-		GFF7285	0.64	+0.7
3,870	-				-0.3