Strain Fitness in Variovorax sp. SCN45 around GFF7244

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7243 and GFF7244 are separated by 226 nucleotidesGFF7244 and GFF7245 are separated by 196 nucleotidesGFF7245 and GFF7246 are separated by 1 nucleotides GFF7243 - HtrA protease/chaperone protein, at 23,727 to 25,010 GFF7243 GFF7244 - no description, at 25,237 to 25,764 GFF7244 GFF7245 - universal stress protein, UspA family, at 25,961 to 26,383 GFF7245 GFF7246 - HtrA protease/chaperone protein, at 26,385 to 27,824 GFF7246 Position (kb) 25 26Strain fitness (log2 ratio) -1 0 1at 24.346 kb on + strand, within GFF7243at 24.346 kb on + strand, within GFF7243at 24.433 kb on + strand, within GFF7243at 24.433 kb on + strand, within GFF7243at 24.433 kb on + strand, within GFF7243at 24.433 kb on + strand, within GFF7243at 24.434 kb on - strand, within GFF7243at 24.434 kb on - strand, within GFF7243at 24.451 kb on + strand, within GFF7243at 24.451 kb on + strand, within GFF7243at 24.452 kb on - strand, within GFF7243at 24.877 kb on - strand, within GFF7243at 25.734 kb on - strandat 25.740 kb on - strandat 25.994 kb on + strandat 26.126 kb on + strand, within GFF7245at 26.126 kb on + strand, within GFF7245at 26.682 kb on + strand, within GFF7246at 26.682 kb on + strand, within GFF7246at 26.682 kb on + strand, within GFF7246

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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24,346 + GFF7243 0.48 +0.1
24,346 + GFF7243 0.48 -0.0
24,433 + GFF7243 0.55 +1.1
24,433 + GFF7243 0.55 -0.7
24,433 + GFF7243 0.55 -0.4
24,433 + GFF7243 0.55 +0.7
24,434 - GFF7243 0.55 -0.6
24,434 - GFF7243 0.55 -0.2
24,451 + GFF7243 0.56 -0.1
24,451 + GFF7243 0.56 -0.4
24,452 - GFF7243 0.56 -0.4
24,877 - GFF7243 0.90 -0.3
25,734 - -0.5
25,740 - +0.2
25,994 + -0.3
26,126 + GFF7245 0.39 +0.8
26,126 + GFF7245 0.39 +0.3
26,682 + GFF7246 0.21 -0.4
26,682 + GFF7246 0.21 -0.7
26,682 + GFF7246 0.21 +0.6

Or see this region's nucleotide sequence