Strain Fitness in Variovorax sp. SCN45 around GFF6875

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
6,779	+		GFF6874	0.60	-0.1
6,791	+		GFF6874	0.61	-1.4
6,791	+		GFF6874	0.61	-0.7
6,817	+		GFF6874	0.62	-0.1
6,817	+		GFF6874	0.62	-0.8
6,817	+		GFF6874	0.62	+0.0
6,817	+		GFF6874	0.62	-0.4
6,817	+		GFF6874	0.62	+0.2
6,817	+		GFF6874	0.62	-0.4
6,817	+		GFF6874	0.62	-0.2
6,817	+		GFF6874	0.62	-0.8
6,817	+		GFF6874	0.62	+0.2
6,817	+		GFF6874	0.62	-0.4
6,817	+		GFF6874	0.62	-0.1
6,817	+		GFF6874	0.62	-0.4
6,817	+		GFF6874	0.62	-0.2
6,817	+		GFF6874	0.62	+0.6
6,818	-		GFF6874	0.62	-0.4
6,818	-		GFF6874	0.62	-2.4
6,818	-		GFF6874	0.62	-0.4
6,818	-		GFF6874	0.62	-1.0
6,818	-		GFF6874	0.62	-1.2
6,818	-		GFF6874	0.62	+1.1
6,818	-		GFF6874	0.62	-0.2
6,818	-		GFF6874	0.62	-1.2
6,818	-		GFF6874	0.62	-0.8
6,818	-		GFF6874	0.62	+0.1
6,818	-		GFF6874	0.62	-1.4
6,818	-		GFF6874	0.62	-1.1
6,818	-		GFF6874	0.62	-2.1
6,818	-		GFF6874	0.62	+1.3
6,818	-		GFF6874	0.62	-0.1
6,818	-		GFF6874	0.62	+0.3
6,818	-		GFF6874	0.62	-1.2
6,854	+		GFF6874	0.64	-0.6
7,052	+		GFF6874	0.76	-1.9
7,053	-		GFF6874	0.76	-0.0
7,053	-		GFF6874	0.76	+0.5
7,053	-		GFF6874	0.76	+1.8
7,114	+		GFF6874	0.79	+0.3
7,114	+		GFF6874	0.79	-0.7
7,114	+		GFF6874	0.79	-1.0
7,114	+		GFF6874	0.79	+0.3
7,114	+		GFF6874	0.79	+0.1
7,114	+		GFF6874	0.79	+0.5
7,114	+		GFF6874	0.79	-0.2
7,114	+		GFF6874	0.79	-0.1
7,115	-		GFF6874	0.80	-1.1
7,115	-		GFF6874	0.80	-2.8
7,115	-		GFF6874	0.80	-2.6
7,115	-		GFF6874	0.80	-0.2
7,115	-		GFF6874	0.80	-0.5
7,115	-		GFF6874	0.80	+0.9
7,115	-		GFF6874	0.80	-0.4
7,115	-		GFF6874	0.80	-0.7
7,115	-		GFF6874	0.80	-0.5
7,115	-		GFF6874	0.80	+0.2
7,115	-		GFF6874	0.80	-0.3
7,115	-		GFF6874	0.80	-0.3
7,180	+		GFF6874	0.83	+0.1
7,180	+		GFF6874	0.83	-0.5
7,180	+		GFF6874	0.83	-0.6
7,180	+		GFF6874	0.83	+0.6
7,181	-		GFF6874	0.83	-0.4
7,181	-		GFF6874	0.83	+0.0
7,181	-		GFF6874	0.83	+0.3
7,181	-		GFF6874	0.83	+0.6
7,255	+		GFF6874	0.88	-1.0
7,256	-		GFF6874	0.88	-0.4
7,256	-		GFF6874	0.88	-1.2
7,256	-		GFF6874	0.88	-0.7
7,256	-		GFF6874	0.88	-0.1
7,256	-		GFF6874	0.88	-0.4
7,261	+		GFF6874	0.88	-1.0
7,292	+		GFF6874	0.90	+0.1
7,292	+		GFF6874	0.90	-0.4
7,292	+		GFF6874	0.90	-0.7
7,292	+		GFF6874	0.90	+0.4
7,293	-		GFF6874	0.90	-0.3
7,293	-		GFF6874	0.90	-0.9
7,384	+				-0.2
7,384	+				-1.9
7,384	+				+0.2
7,384	+				-0.5
7,384	+				-0.7
7,384	+				+0.5
7,384	+				-0.8
7,384	+				-1.5
7,384	+				-0.3
7,384	+				-0.8
7,384	+				-0.9
7,384	+				+0.1
7,384	+				+0.6
7,384	+				+1.8
7,384	+				-0.4
7,384	+				+0.3
7,385	-				+0.5
7,385	-				+0.1
7,385	-				-2.0
7,385	-				-0.5
7,385	-				+1.1
7,385	-				-1.5
7,385	-				+0.1
7,385	-				-0.9
7,385	-				-0.3
7,385	-				-0.6
7,385	-				-0.9
7,385	-				+0.8
7,385	-				-1.4
7,385	-				-0.5
7,385	-				+0.0
7,385	-				-2.4
7,385	-				+0.3
7,405	-				+0.4
7,481	+				-0.4
7,481	+				-0.8
7,481	+				-1.0
7,481	+				-1.5
7,481	+				+1.8
7,482	-				+1.3
7,482	-				-0.5
7,482	-				+0.4
7,482	-				+2.1
7,507	-				+0.2
7,532	+				-0.7
7,532	+				-0.1
7,533	-				-0.2
7,533	-				-1.1
7,533	-				-0.1
7,568	+				+0.3
7,569	-				-0.8
7,569	-				-0.1
7,785	+				-1.7
7,785	+				-3.5
7,785	+				-1.2
7,785	+				-1.0
7,785	+				-1.5
7,786	-				-2.1
7,786	-				-1.3
7,858	+				-1.2
7,859	-				-2.4
7,966	+		GFF6875	0.21	-2.9
7,967	-		GFF6875	0.21	-1.9
7,997	+		GFF6875	0.24	-1.9
7,998	-		GFF6875	0.24	+1.0
7,998	-		GFF6875	0.24	-4.0
7,998	-		GFF6875	0.24	+0.8
7,999	-		GFF6875	0.25	-1.4
8,018	+		GFF6875	0.27	-3.2
8,018	+		GFF6875	0.27	-1.9
8,018	+		GFF6875	0.27	-1.4
8,018	+		GFF6875	0.27	-0.0
8,018	+		GFF6875	0.27	-1.2
8,018	+		GFF6875	0.27	-1.5
8,019	-		GFF6875	0.27	-0.5
8,019	-		GFF6875	0.27	-2.7
8,019	-		GFF6875	0.27	-1.7
8,019	-		GFF6875	0.27	-2.8
8,155	+		GFF6875	0.41	-1.5
8,155	+		GFF6875	0.41	-0.8
8,156	-		GFF6875	0.41	-1.2
8,156	-		GFF6875	0.41	-0.3
8,156	-		GFF6875	0.41	-2.9
8,156	-		GFF6875	0.41	-2.3
8,156	-		GFF6875	0.41	-0.8
8,156	-		GFF6875	0.41	-0.1
8,161	+		GFF6875	0.42	-3.8
8,161	+		GFF6875	0.42	-1.5
8,161	+		GFF6875	0.42	-0.5
8,161	+		GFF6875	0.42	-0.5
8,161	+		GFF6875	0.42	-0.8
8,162	-		GFF6875	0.42	-0.2
8,162	-		GFF6875	0.42	-1.8
8,162	-		GFF6875	0.42	-1.2
8,162	-		GFF6875	0.42	-1.2
8,162	-		GFF6875	0.42	-0.8
8,234	+		GFF6875	0.49	-3.1
8,234	+		GFF6875	0.49	-0.8
8,235	-		GFF6875	0.50	-2.9
8,235	-		GFF6875	0.50	-2.0
8,582	+		GFF6875	0.86	-0.8
8,582	+		GFF6875	0.86	-2.0
8,582	+		GFF6875	0.86	-1.7
8,582	+		GFF6875	0.86	-1.9
8,583	-		GFF6875	0.86	-1.7
8,583	-		GFF6875	0.86	+0.8
8,620	+				-1.0
8,727	+				-0.1
8,727	+				-0.5
8,727	+				-0.0
8,727	+				-0.7
8,727	+				-0.4
8,727	+				-0.2
8,727	+				-0.5
8,727	+				-0.5
8,727	+				+0.2
8,727	+				-0.3
8,727	+				+0.2
8,727	+				+0.8
8,728	-				-0.2
8,728	-				+0.3
8,728	-				+0.4
8,728	-				-0.5
8,728	-				-1.2
8,728	-				+0.1
8,728	-				-1.2
8,728	-				-1.8
8,728	-				-1.0
8,728	-				-0.3
8,868	+		GFF6876	0.13	-2.2
8,868	+		GFF6876	0.13	-2.0
8,869	-		GFF6876	0.13	-0.5
8,869	-		GFF6876	0.13	-1.2
8,869	-		GFF6876	0.13	-2.4
8,869	-		GFF6876	0.13	-2.7
8,869	-		GFF6876	0.13	-0.5
8,869	-		GFF6876	0.13	-1.0
8,898	+		GFF6876	0.16	-2.6
8,899	-		GFF6876	0.16	-3.1
8,899	-		GFF6876	0.16	-0.5
8,973	+		GFF6876	0.22	-3.7
8,973	+		GFF6876	0.22	-3.7
8,973	+		GFF6876	0.22	-1.8
8,973	+		GFF6876	0.22	-2.8
8,973	+		GFF6876	0.22	-1.0
8,973	+		GFF6876	0.22	-2.7
8,974	-		GFF6876	0.23	-0.8
8,974	-		GFF6876	0.23	-2.7
8,974	-		GFF6876	0.23	-2.5
8,974	-		GFF6876	0.23	-3.5
8,982	+		GFF6876	0.23	+0.5
8,982	+		GFF6876	0.23	-1.8
8,982	+		GFF6876	0.23	-1.4
8,982	+		GFF6876	0.23	-2.4
8,982	+		GFF6876	0.23	-2.2
8,982	+		GFF6876	0.23	-3.2
8,982	+		GFF6876	0.23	-0.8
8,982	+		GFF6876	0.23	-3.2
8,983	-		GFF6876	0.23	-0.8
8,983	-		GFF6876	0.23	-1.9
8,983	-		GFF6876	0.23	-2.9
8,983	-		GFF6876	0.23	-0.8
8,983	-		GFF6876	0.23	-3.4
8,983	-		GFF6876	0.23	-2.4
8,983	-		GFF6876	0.23	-2.1
8,983	-		GFF6876	0.23	-2.6
8,983	-		GFF6876	0.23	-2.8
9,002	-		GFF6876	0.25	-1.9
9,002	-		GFF6876	0.25	+0.2
9,051	+		GFF6876	0.30	-1.2
9,051	+		GFF6876	0.30	+0.8
9,171	+		GFF6876	0.40	-2.9
9,171	+		GFF6876	0.40	-2.7
9,171	+		GFF6876	0.40	-1.0
9,171	+		GFF6876	0.40	-3.2
9,171	+		GFF6876	0.40	-1.2
9,171	+		GFF6876	0.40	-1.7
9,171	+		GFF6876	0.40	-2.3
9,171	+		GFF6876	0.40	-2.1
9,171	+		GFF6876	0.40	-4.3
9,171	+		GFF6876	0.40	+1.8
9,171	+		GFF6876	0.40	+0.8
9,171	+		GFF6876	0.40	-2.0
9,171	+		GFF6876	0.40	-3.1
9,171	+		GFF6876	0.40	-3.1
9,171	+		GFF6876	0.40	-1.0
9,171	+		GFF6876	0.40	-2.6
9,171	+		GFF6876	0.40	-2.7
9,171	+		GFF6876	0.40	-3.1
9,171	+		GFF6876	0.40	-2.4
9,171	+		GFF6876	0.40	-1.0
9,171	+		GFF6876	0.40	-1.9
9,171	+		GFF6876	0.40	+0.2
9,171	+		GFF6876	0.40	-0.5
9,171	+		GFF6876	0.40	-1.2
9,171	+		GFF6876	0.40	-1.8
9,172	-		GFF6876	0.41	-3.2
9,172	-		GFF6876	0.41	-1.4
9,172	-		GFF6876	0.41	-2.8
9,172	-		GFF6876	0.41	-1.3
9,172	-		GFF6876	0.41	-3.6
9,172	-		GFF6876	0.41	-0.8
9,172	-		GFF6876	0.41	-3.2
9,172	-		GFF6876	0.41	-0.5
9,172	-		GFF6876	0.41	-1.1
9,172	-		GFF6876	0.41	-3.4
9,172	-		GFF6876	0.41	-1.5
9,172	-		GFF6876	0.41	-1.5
9,172	-		GFF6876	0.41	-4.1
9,172	-		GFF6876	0.41	-3.2
9,172	-		GFF6876	0.41	-1.4
9,172	-		GFF6876	0.41	-0.8
9,172	-		GFF6876	0.41	-2.5
9,172	-		GFF6876	0.41	-2.4
9,189	+		GFF6876	0.42	-3.1
9,189	+		GFF6876	0.42	-1.2
9,189	+		GFF6876	0.42	-2.3
9,189	+		GFF6876	0.42	-2.9
9,189	+		GFF6876	0.42	-2.7
9,189	+		GFF6876	0.42	-1.9
9,189	+		GFF6876	0.42	-2.4
9,190	-		GFF6876	0.42	-3.4
9,190	-		GFF6876	0.42	-1.4
9,282	+		GFF6876	0.50	-1.0
9,429	+		GFF6876	0.64	-2.2
9,457	+		GFF6876	0.66	-1.2
9,457	+		GFF6876	0.66	-1.6
9,501	+		GFF6876	0.70	-2.4
9,501	+		GFF6876	0.70	-1.2
9,501	+		GFF6876	0.70	-3.7
9,501	+		GFF6876	0.70	+0.8
9,501	+		GFF6876	0.70	-1.8
9,501	+		GFF6876	0.70	-2.2
9,501	+		GFF6876	0.70	-1.8
9,501	+		GFF6876	0.70	-1.7
9,501	+		GFF6876	0.70	-1.7
9,501	+		GFF6876	0.70	-1.2
9,501	+		GFF6876	0.70	+0.8
9,501	+		GFF6876	0.70	-3.2
9,501	+		GFF6876	0.70	-3.5
9,501	+		GFF6876	0.70	-1.0
9,501	+		GFF6876	0.70	-1.2
9,502	-		GFF6876	0.70	-2.8
9,502	-		GFF6876	0.70	-0.5
9,502	-		GFF6876	0.70	-2.9
9,502	-		GFF6876	0.70	-2.3
9,502	-		GFF6876	0.70	-2.5
9,502	-		GFF6876	0.70	-0.5
9,502	-		GFF6876	0.70	-1.5
9,502	-		GFF6876	0.70	-2.0
9,502	-		GFF6876	0.70	-2.7
9,502	-		GFF6876	0.70	-1.5
9,502	-		GFF6876	0.70	-0.6
9,502	-		GFF6876	0.70	-2.9
9,502	-		GFF6876	0.70	-2.5
9,571	-		GFF6876	0.77	-1.5
9,687	+		GFF6876	0.87	-3.2
9,688	-		GFF6876	0.87	-1.7