Strain Fitness in Variovorax sp. SCN45 around GFF6777

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
22,696	-		GFF6775	0.88	-0.2
22,756	+				-1.0
22,757	-				-0.0
22,771	-				-0.7
22,771	-				-0.4
22,771	-				-0.7
22,771	-				-0.5
22,822	-				-0.9
22,886	+		GFF6776	0.11	+0.0
22,886	+		GFF6776	0.11	-0.6
22,887	-		GFF6776	0.11	+0.9
22,887	-		GFF6776	0.11	+0.8
23,000	+		GFF6776	0.24	+1.0
23,000	+		GFF6776	0.24	-0.7
23,001	-		GFF6776	0.24	-0.4
23,001	-		GFF6776	0.24	-0.0
23,157	-		GFF6776	0.42	+0.6
23,192	+		GFF6776	0.46	-0.1
23,192	+		GFF6776	0.46	-1.2
23,192	+		GFF6776	0.46	-0.4
23,193	-		GFF6776	0.47	-0.8
23,193	-		GFF6776	0.47	-2.7
23,193	-		GFF6776	0.47	+0.2
23,210	+		GFF6776	0.49	-1.7
23,210	+		GFF6776	0.49	+0.5
23,211	-		GFF6776	0.49	-0.3
23,375	+		GFF6776	0.68	-0.9
23,376	-		GFF6776	0.68	-1.6
23,417	+		GFF6776	0.73	-0.2
23,418	-		GFF6776	0.73	+0.0
23,444	+		GFF6776	0.76	-0.5
23,444	+		GFF6776	0.76	+0.5
23,444	+		GFF6776	0.76	-1.2
23,444	+		GFF6776	0.76	-0.2
23,444	+		GFF6776	0.76	-0.3
23,444	+		GFF6776	0.76	-0.3
23,445	-		GFF6776	0.76	-1.2
23,450	+		GFF6776	0.77	+0.2
23,450	+		GFF6776	0.77	+0.4
23,450	+		GFF6776	0.77	-0.2
23,450	+		GFF6776	0.77	-0.1
23,451	-		GFF6776	0.77	-0.2
23,451	-		GFF6776	0.77	+0.3
23,564	+				-1.7
23,564	+				+0.7
23,565	-				+0.2
23,588	+				-0.7
23,588	+				-0.2
23,588	+				+0.1
23,588	+				-0.6
23,589	-				-1.6
23,589	-				+0.3
23,589	-				+0.3
23,589	-				+0.0
23,591	+				-0.6
23,591	+				-0.7
23,591	+				-0.9
23,592	-				-0.2
23,592	-				-2.2
23,592	-				-0.3
23,592	-				-0.7
23,592	-				+0.6
23,606	+				-1.0
23,607	-				+1.8
23,607	-				-0.2
23,920	+		GFF6777	0.23	+0.6
23,920	+		GFF6777	0.23	-0.2
23,920	+		GFF6777	0.23	-0.2
23,921	-		GFF6777	0.23	+0.0
24,235	+		GFF6777	0.53	+0.4
24,236	-		GFF6777	0.53	-0.6
24,236	-		GFF6777	0.53	-0.8
24,236	-		GFF6777	0.53	+0.2
24,334	+		GFF6777	0.62	-1.0
24,334	+		GFF6777	0.62	+1.0
24,334	+		GFF6777	0.62	-1.7
24,335	-		GFF6777	0.62	-1.0
24,503	-		GFF6777	0.78	+0.0
24,844	-				-0.4
24,993	+		GFF6778	0.22	+0.1
24,994	-		GFF6778	0.22	+0.2
25,032	+		GFF6778	0.25	-0.0
25,033	-		GFF6778	0.25	-0.8
25,033	-		GFF6778	0.25	-0.5
25,554	+		GFF6778	0.73	+0.1
25,692	+		GFF6778	0.85	-1.6
25,693	-		GFF6778	0.85	-1.0
25,693	-		GFF6778	0.85	-0.8
25,710	+		GFF6778	0.87	-0.6
25,710	+		GFF6778	0.87	-0.3
25,710	+		GFF6778	0.87	-1.8
25,710	+		GFF6778	0.87	+1.4
25,711	-		GFF6778	0.87	+0.1
25,714	-		GFF6778	0.87	-0.4