Strain Fitness in Variovorax sp. SCN45 around GFF6638

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
10,857	+		GFF6637	0.49	-0.6
10,858	-		GFF6637	0.49	-0.5
10,858	-		GFF6637	0.49	+0.7
10,858	-		GFF6637	0.49	-0.2
11,157	+		GFF6637	0.70	-0.3
11,157	+		GFF6637	0.70	+0.7
11,157	+		GFF6637	0.70	+0.6
11,157	+		GFF6637	0.70	+1.2
11,158	-		GFF6637	0.70	-1.7
11,158	-		GFF6637	0.70	+0.0
11,158	-		GFF6637	0.70	+0.9
11,158	-		GFF6637	0.70	-0.5
11,158	-		GFF6637	0.70	-0.7
11,158	-		GFF6637	0.70	+0.7
11,158	-		GFF6637	0.70	+1.2
11,376	+		GFF6637	0.84	-1.4
11,377	-		GFF6637	0.84	-0.9
11,432	+		GFF6637	0.88	-0.0
11,707	+				-0.9
11,707	+				+0.8
11,707	+				-1.5
11,707	+				-0.3
11,707	+				-0.7
11,707	+				-2.1
11,708	-				-1.1
11,708	-				-1.5
11,708	-				-1.2
11,708	-				-1.7
11,708	-				-1.1
11,749	+		GFF6638	0.11	-0.5
11,749	+		GFF6638	0.11	+1.0
11,799	+		GFF6638	0.26	-2.0
11,799	+		GFF6638	0.26	+0.2
11,800	-		GFF6638	0.26	-0.9
11,800	-		GFF6638	0.26	+0.9
11,800	-		GFF6638	0.26	-1.1
11,800	-		GFF6638	0.26	-1.4
11,800	-		GFF6638	0.26	-1.4
11,800	-		GFF6638	0.26	-1.4
11,800	-		GFF6638	0.26	+0.4
11,800	-		GFF6638	0.26	-0.2
11,800	-		GFF6638	0.26	-3.1
11,802	+		GFF6638	0.26	-0.6
11,802	+		GFF6638	0.26	-0.8
11,802	+		GFF6638	0.26	-0.8
11,802	+		GFF6638	0.26	-0.6
11,802	+		GFF6638	0.26	-2.0
11,802	+		GFF6638	0.26	-1.9
11,802	+		GFF6638	0.26	-1.6
11,802	+		GFF6638	0.26	-0.9
11,802	+		GFF6638	0.26	-2.2
11,802	+		GFF6638	0.26	-1.2
11,802	+		GFF6638	0.26	-0.8
11,802	+		GFF6638	0.26	-0.4
11,802	+		GFF6638	0.26	+0.2
11,802	+		GFF6638	0.26	-1.8
11,802	+		GFF6638	0.26	-0.9
11,802	+		GFF6638	0.26	-2.7
11,802	+		GFF6638	0.26	-1.1
11,802	+		GFF6638	0.26	-1.4
11,803	-		GFF6638	0.27	-1.7
11,803	-		GFF6638	0.27	+0.1
11,803	-		GFF6638	0.27	-0.6
11,803	-		GFF6638	0.27	-0.4
11,803	-		GFF6638	0.27	-2.4
11,803	-		GFF6638	0.27	+0.6
11,803	-		GFF6638	0.27	-2.4
11,803	-		GFF6638	0.27	-1.6
11,803	-		GFF6638	0.27	+0.8
11,803	-		GFF6638	0.27	-1.3
11,803	-		GFF6638	0.27	-2.7
12,033	+				-1.2
12,033	+				-1.5
12,033	+				-1.2
12,033	+				-0.6
12,033	+				+1.1
12,033	+				-0.6
12,033	+				+0.7
12,033	+				-0.5
12,033	+				-0.8
12,033	+				+0.1
12,033	+				-0.9
12,033	+				-1.7
12,033	+				-1.4
12,034	-				+0.0
12,034	-				-0.4
12,034	-				-1.0
12,034	-				-1.7
12,034	-				-1.2
12,034	-				-0.6
12,034	-				-1.6
12,034	-				-0.3
12,034	-				-1.1
12,034	-				-1.0
12,034	-				-0.9
12,034	-				+1.2
12,034	-				+0.4
12,034	-				-0.2
12,034	-				-0.8
12,034	-				+1.8
12,034	-				-1.4
12,230	-		GFF6639	0.25	-0.1
12,350	+		GFF6639	0.41	-1.5
12,350	+		GFF6639	0.41	-2.0
12,419	+		GFF6639	0.51	+0.4
12,419	+		GFF6639	0.51	-1.1
12,420	-		GFF6639	0.51	+0.3
12,420	-		GFF6639	0.51	-1.2
12,420	-		GFF6639	0.51	-0.2
12,420	-		GFF6639	0.51	-1.9
12,420	-		GFF6639	0.51	-0.0
12,420	-		GFF6639	0.51	-1.4
12,420	-		GFF6639	0.51	-0.1
12,440	+		GFF6639	0.54	-0.2
12,440	+		GFF6639	0.54	-0.2
12,441	-		GFF6639	0.54	-0.5
12,441	-		GFF6639	0.54	-0.8
12,441	-		GFF6639	0.54	-1.3
12,441	-		GFF6639	0.54	-0.8
12,441	-		GFF6639	0.54	-0.6
12,483	-		GFF6639	0.60	+0.2
12,483	-		GFF6639	0.60	-0.6
12,847	+				-0.6
12,848	-				-0.8
12,848	-				-0.9
12,848	-				-0.4
12,848	-				-1.6