Strain Fitness in Variovorax sp. SCN45 around GFF6602

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
48,161	+		GFF6601	0.73	+0.4
48,220	-		GFF6601	0.76	+1.7
48,343	-		GFF6601	0.82	-0.3
48,390	+		GFF6601	0.84	-0.2
48,390	+		GFF6601	0.84	-1.1
48,390	+		GFF6601	0.84	-0.8
48,581	+				-0.3
48,717	+				+1.1
48,767	-				-0.9
49,041	-				-0.2
49,041	-				+0.0
49,041	-				-0.1
49,108	+				-0.4
49,383	+		GFF6602	0.40	-1.1
49,384	-		GFF6602	0.40	+0.6
49,384	-		GFF6602	0.40	+0.7
49,422	-		GFF6602	0.47	-2.1
49,422	-		GFF6602	0.47	-0.8
49,447	+		GFF6602	0.51	-1.4
49,565	-		GFF6602	0.72	-0.9
49,597	+		GFF6602	0.77	-0.2
49,597	+		GFF6602	0.77	+0.9
49,598	-		GFF6602	0.77	+0.3
49,598	-		GFF6602	0.77	-1.6
49,598	-		GFF6602	0.77	+0.3
49,715	+				-0.5
49,715	+				-0.1
49,773	+				-0.3
49,919	+		GFF6603	0.36	-0.4
49,920	-		GFF6603	0.36	-0.2
49,920	-		GFF6603	0.36	+0.2
49,920	-		GFF6603	0.36	+0.1
50,020	-		GFF6603	0.54	+0.5
50,099	+		GFF6603	0.69	-0.1
50,100	-		GFF6603	0.69	-0.0
50,130	+		GFF6603	0.74	-1.6
50,130	+		GFF6603	0.74	+0.9
50,131	-		GFF6603	0.75	+0.1
50,131	-		GFF6603	0.75	-0.8
50,131	-		GFF6603	0.75	+0.7
50,131	-		GFF6603	0.75	-1.0
50,131	-		GFF6603	0.75	-2.0
50,154	+		GFF6603	0.79	-1.4
50,154	+		GFF6603	0.79	-0.1
50,154	+		GFF6603	0.79	-1.6
50,155	-		GFF6603	0.79	+0.1
50,155	-		GFF6603	0.79	-0.1
50,155	-		GFF6603	0.79	+0.3
50,414	+		GFF6604	0.54	-0.3