Strain Fitness in Variovorax sp. SCN45 around GFF6412

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
85,976	+				+0.9
86,110	+		GFF6411	0.12	-0.3
86,110	+		GFF6411	0.12	+0.6
86,110	+		GFF6411	0.12	+0.4
86,110	+		GFF6411	0.12	-0.6
86,110	+		GFF6411	0.12	+0.5
86,111	-		GFF6411	0.12	-0.8
86,111	-		GFF6411	0.12	-1.3
86,111	-		GFF6411	0.12	-0.2
86,111	-		GFF6411	0.12	-0.8
86,111	-		GFF6411	0.12	+1.5
86,111	-		GFF6411	0.12	-0.6
86,542	+		GFF6411	0.67	-0.3
86,542	+		GFF6411	0.67	-0.5
86,542	+		GFF6411	0.67	+0.8
86,542	+		GFF6411	0.67	+1.3
86,542	+		GFF6411	0.67	-1.2
86,543	-		GFF6411	0.67	-0.5
86,543	-		GFF6411	0.67	+0.1
86,543	-		GFF6411	0.67	-0.3
86,982	+		GFF6412	0.22	+0.3
86,982	+		GFF6412	0.22	-0.2
86,982	+		GFF6412	0.22	+1.4
86,982	+		GFF6412	0.22	-0.6
86,982	+		GFF6412	0.22	+0.2
86,982	+		GFF6412	0.22	-0.5
86,982	+		GFF6412	0.22	-1.1
86,982	+		GFF6412	0.22	-0.1
86,983	-		GFF6412	0.22	+0.3
86,983	-		GFF6412	0.22	-0.6
86,983	-		GFF6412	0.22	+0.0
86,983	-		GFF6412	0.22	+0.1
86,983	-		GFF6412	0.22	-0.1
86,983	-		GFF6412	0.22	+0.4
87,090	+		GFF6412	0.35	+0.6
87,090	+		GFF6412	0.35	-0.1
87,090	+		GFF6412	0.35	-0.4
87,090	+		GFF6412	0.35	+1.1
87,171	+		GFF6412	0.44	-1.1
87,249	+		GFF6412	0.53	+0.6
87,249	+		GFF6412	0.53	+0.2
87,308	-		GFF6412	0.60	+0.0
87,308	-		GFF6412	0.60	-0.1
87,399	+		GFF6412	0.71	-1.1
87,400	-		GFF6412	0.71	-0.5
87,497	+		GFF6412	0.83	-0.2
87,497	+		GFF6412	0.83	-0.2
87,497	+		GFF6412	0.83	+1.3
87,497	+		GFF6412	0.83	-1.0
87,497	+		GFF6412	0.83	-0.1
87,498	-		GFF6412	0.83	-2.0
87,498	-		GFF6412	0.83	-0.3
87,498	-		GFF6412	0.83	-1.9
87,498	-		GFF6412	0.83	+0.5
87,498	-		GFF6412	0.83	+1.0
87,655	+				+0.5
87,655	+				-0.5
87,655	+				+0.3
87,655	+				+0.5
87,655	+				-0.7
87,655	+				+0.9
87,655	+				-0.6
87,656	-				+1.9
87,656	-				-0.4
87,656	-				+0.4
87,656	-				-0.4
87,656	-				+1.1
87,656	-				-1.2
87,656	-				-0.7
87,656	-				-0.4
87,656	-				+0.1
87,656	-				-0.7
87,656	-				-0.3
87,656	-				-0.9
87,656	-				+1.5
87,873	-		GFF6413	0.23	+1.5
87,916	+		GFF6413	0.27	+0.1
87,916	+		GFF6413	0.27	+1.4
87,916	+		GFF6413	0.27	+0.2
88,060	+		GFF6413	0.42	+0.0
88,060	+		GFF6413	0.42	+0.1
88,060	+		GFF6413	0.42	+1.9
88,060	+		GFF6413	0.42	-0.3
88,061	-		GFF6413	0.42	-0.2
88,061	-		GFF6413	0.42	-0.2
88,061	-		GFF6413	0.42	+0.5
88,061	-		GFF6413	0.42	-0.1
88,061	-		GFF6413	0.42	+0.1
88,069	+		GFF6413	0.43	-0.6
88,069	+		GFF6413	0.43	+0.2
88,069	+		GFF6413	0.43	-0.1
88,069	+		GFF6413	0.43	-0.1
88,069	+		GFF6413	0.43	-2.1
88,069	+		GFF6413	0.43	+0.4
88,069	+		GFF6413	0.43	+1.5
88,069	+		GFF6413	0.43	-1.5
88,069	+		GFF6413	0.43	-0.8
88,070	-		GFF6413	0.43	+0.9
88,070	-		GFF6413	0.43	+0.2
88,070	-		GFF6413	0.43	-0.6
88,070	-		GFF6413	0.43	+0.6
88,070	-		GFF6413	0.43	-0.0
88,070	-		GFF6413	0.43	-0.1
88,070	-		GFF6413	0.43	-0.6
88,070	-		GFF6413	0.43	-0.2
88,070	-		GFF6413	0.43	-1.5
88,070	-		GFF6413	0.43	+1.3
88,070	-		GFF6413	0.43	+1.1
88,070	-		GFF6413	0.43	-1.9
88,070	-		GFF6413	0.43	+0.7
88,070	-		GFF6413	0.43	-0.4
88,070	-		GFF6413	0.43	-0.8
88,070	-		GFF6413	0.43	+1.9
88,195	+		GFF6413	0.56	-0.6
88,195	+		GFF6413	0.56	-0.2
88,195	+		GFF6413	0.56	-0.1
88,196	-		GFF6413	0.56	-0.1
88,196	-		GFF6413	0.56	-1.2
88,291	+		GFF6413	0.66	-1.3
88,292	-		GFF6413	0.66	-0.1
88,608	+				-0.2
88,608	+				-1.8
88,608	+				-0.0
88,608	+				+0.7
88,608	+				-1.8
88,608	+				-0.4
88,608	+				+0.1
88,608	+				+0.6
88,609	-				+0.2
88,609	-				+0.4
88,609	-				+0.2
88,609	-				+0.4
88,609	-				-0.1
88,609	-				+0.5
88,629	+				+0.8
88,629	+				-0.6
88,629	+				-0.2