Strain Fitness in Variovorax sp. SCN45 around GFF6408

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
80,966	+				+0.3
80,966	+				+1.4
80,967	-				+1.0
80,967	-				+1.6
80,967	-				+0.7
80,967	-				+0.4
80,967	-				-0.9
80,967	-				+0.1
81,018	-				+0.2
81,036	+				+0.5
81,036	+				-0.2
81,036	+				-0.2
81,036	+				-1.1
81,037	-				-0.8
81,037	-				+0.5
81,037	-				+0.5
81,037	-				+0.4
81,037	-				-0.3
81,048	-				-1.1
81,368	+		GFF6407	0.38	-0.8
81,488	+		GFF6407	0.52	+1.4
81,488	+		GFF6407	0.52	+0.2
81,488	+		GFF6407	0.52	+0.9
81,488	+		GFF6407	0.52	+0.5
81,488	+		GFF6407	0.52	-0.2
81,488	+		GFF6407	0.52	+2.5
81,489	-		GFF6407	0.52	+0.8
81,489	-		GFF6407	0.52	+0.1
81,489	-		GFF6407	0.52	+0.5
81,489	-		GFF6407	0.52	-1.4
81,489	-		GFF6407	0.52	-0.4
81,489	-		GFF6407	0.52	+2.4
81,489	-		GFF6407	0.52	-0.0
81,489	-		GFF6407	0.52	+0.7
81,489	-		GFF6407	0.52	+0.6
81,491	+		GFF6407	0.53	-0.1
81,491	+		GFF6407	0.53	-1.1
81,491	+		GFF6407	0.53	-0.1
81,492	-		GFF6407	0.53	-1.0
81,492	-		GFF6407	0.53	+0.2
81,492	-		GFF6407	0.53	+0.1
81,492	-		GFF6407	0.53	+0.1
81,560	+		GFF6407	0.61	-0.0
81,560	+		GFF6407	0.61	-0.6
81,561	-		GFF6407	0.61	-0.5
82,070	-		GFF6408	0.10	-0.4
82,070	-		GFF6408	0.10	-1.1
82,070	-		GFF6408	0.10	-0.6
82,070	-		GFF6408	0.10	-0.9
82,070	-		GFF6408	0.10	+0.1
82,070	-		GFF6408	0.10	-0.1
82,441	+		GFF6408	0.32	-0.8
82,441	+		GFF6408	0.32	-1.9
82,441	+		GFF6408	0.32	+0.7
82,441	+		GFF6408	0.32	-0.4
82,441	+		GFF6408	0.32	-0.6
82,441	+		GFF6408	0.32	-0.0
82,442	-		GFF6408	0.32	+0.1
82,442	-		GFF6408	0.32	+0.1
82,442	-		GFF6408	0.32	+0.1
82,442	-		GFF6408	0.32	+0.2
82,442	-		GFF6408	0.32	-0.1
82,442	-		GFF6408	0.32	-0.1
82,516	+		GFF6408	0.36	-1.5
82,516	+		GFF6408	0.36	+0.5
82,516	+		GFF6408	0.36	+0.4
82,517	-		GFF6408	0.36	-2.6
82,517	-		GFF6408	0.36	-0.2
82,517	-		GFF6408	0.36	-0.2
82,517	-		GFF6408	0.36	-0.8
82,517	-		GFF6408	0.36	+0.9
82,517	-		GFF6408	0.36	+0.6
82,747	+		GFF6408	0.50	-1.1
82,748	-		GFF6408	0.50	-0.1
82,948	+		GFF6408	0.61	+1.7
82,948	+		GFF6408	0.61	-0.3
82,948	+		GFF6408	0.61	-0.5
82,949	-		GFF6408	0.61	+0.7
83,097	-		GFF6408	0.70	-0.3
83,098	+		GFF6408	0.70	+0.1
83,098	+		GFF6408	0.70	+1.3
83,098	+		GFF6408	0.70	+1.7
83,098	+		GFF6408	0.70	+1.9
83,098	+		GFF6408	0.70	+0.5
83,098	+		GFF6408	0.70	-0.7
83,099	-		GFF6408	0.70	-1.5
83,099	-		GFF6408	0.70	+0.1
83,099	-		GFF6408	0.70	-0.3
83,099	-		GFF6408	0.70	-0.2
83,164	+		GFF6408	0.74	+0.5
83,164	+		GFF6408	0.74	-1.0
83,164	+		GFF6408	0.74	+0.5
83,164	+		GFF6408	0.74	+0.2
83,164	+		GFF6408	0.74	-0.4
83,164	+		GFF6408	0.74	+0.2
83,164	+		GFF6408	0.74	-1.2
83,165	-		GFF6408	0.74	-0.2
83,165	-		GFF6408	0.74	-0.6
83,165	-		GFF6408	0.74	-0.4
83,165	-		GFF6408	0.74	+0.7
83,165	-		GFF6408	0.74	+0.3
83,165	-		GFF6408	0.74	-0.2
83,165	-		GFF6408	0.74	-0.1
83,194	+		GFF6408	0.75	-0.0
83,194	+		GFF6408	0.75	-0.0
83,195	-		GFF6408	0.75	-0.6
83,195	-		GFF6408	0.75	+0.1
83,386	+		GFF6408	0.87	-0.1
83,386	+		GFF6408	0.87	-0.2
83,386	+		GFF6408	0.87	-0.7
83,386	+		GFF6408	0.87	+1.4
83,387	-		GFF6408	0.87	+0.9
83,387	-		GFF6408	0.87	-0.9
83,387	-		GFF6408	0.87	+0.1
83,425	+		GFF6408	0.89	-0.3
83,603	+				+0.7
83,603	+				+0.0
83,604	-				-0.9
83,604	-				+0.6
83,605	+				+0.8
83,606	-				-0.5
83,632	+				+0.4
83,632	+				-1.4
83,632	+				-0.1
83,632	+				-0.0
83,633	-				-0.1
83,633	-				+0.4
83,633	-				+0.5
83,651	-				-0.6
83,740	+				-0.3
83,740	+				+0.2
83,741	-				+1.3
84,209	+		GFF6409	0.36	-1.0
84,209	+		GFF6409	0.36	+0.1
84,209	+		GFF6409	0.36	-0.9
84,210	-		GFF6409	0.36	+0.3
84,210	-		GFF6409	0.36	-0.1
84,210	-		GFF6409	0.36	-1.4
84,579	+		GFF6409	0.60	-0.6