Strain Fitness in Variovorax sp. SCN45 around GFF6332

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6331 and GFF6332 are separated by 97 nucleotidesGFF6332 and GFF6333 are separated by 5 nucleotides GFF6331 - D-octopine dehydrogenase (EC 1.5.1.11), at 125,578 to 126,648 GFF6331 GFF6332 - Maltodextrin glucosidase (EC 3.2.1.20), at 126,746 to 128,434 GFF6332 GFF6333 - 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18), at 128,440 to 130,614 GFF6333 Position (kb) 126 127 128 129Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 125.807 kb on + strand, within GFF6331at 125.807 kb on + strand, within GFF6331at 125.807 kb on + strand, within GFF6331at 125.807 kb on + strand, within GFF6331at 125.807 kb on + strand, within GFF6331at 125.807 kb on + strand, within GFF6331at 125.807 kb on + strand, within GFF6331at 125.807 kb on + strand, within GFF6331at 125.808 kb on - strand, within GFF6331at 125.808 kb on - strand, within GFF6331at 125.808 kb on - strand, within GFF6331at 125.808 kb on - strand, within GFF6331at 125.808 kb on - strand, within GFF6331at 125.808 kb on - strand, within GFF6331at 125.808 kb on - strand, within GFF6331at 125.920 kb on + strand, within GFF6331at 125.920 kb on + strand, within GFF6331at 125.920 kb on + strand, within GFF6331at 125.920 kb on + strand, within GFF6331at 125.920 kb on + strand, within GFF6331at 125.921 kb on - strand, within GFF6331at 125.921 kb on - strand, within GFF6331at 125.921 kb on - strand, within GFF6331at 125.921 kb on - strand, within GFF6331at 125.921 kb on - strand, within GFF6331at 126.069 kb on + strand, within GFF6331at 126.070 kb on - strand, within GFF6331at 126.235 kb on + strand, within GFF6331at 126.236 kb on - strand, within GFF6331at 126.318 kb on - strand, within GFF6331at 126.318 kb on - strand, within GFF6331at 126.448 kb on + strand, within GFF6331at 126.448 kb on + strand, within GFF6331at 126.448 kb on + strand, within GFF6331at 126.449 kb on - strand, within GFF6331at 126.449 kb on - strand, within GFF6331at 126.449 kb on - strand, within GFF6331at 126.449 kb on - strand, within GFF6331at 126.469 kb on + strand, within GFF6331at 126.469 kb on + strand, within GFF6331at 126.692 kb on - strandat 126.803 kb on + strandat 126.803 kb on + strandat 126.803 kb on + strandat 126.803 kb on + strandat 126.804 kb on - strandat 126.812 kb on + strandat 126.812 kb on + strandat 126.812 kb on + strandat 126.813 kb on - strandat 126.813 kb on - strandat 127.145 kb on + strand, within GFF6332at 127.145 kb on + strand, within GFF6332at 127.145 kb on + strand, within GFF6332at 127.145 kb on + strand, within GFF6332at 127.145 kb on + strand, within GFF6332at 127.145 kb on + strand, within GFF6332at 127.145 kb on + strand, within GFF6332at 127.145 kb on + strand, within GFF6332at 127.145 kb on + strand, within GFF6332at 127.146 kb on - strand, within GFF6332at 127.146 kb on - strand, within GFF6332at 127.146 kb on - strand, within GFF6332at 127.146 kb on - strand, within GFF6332at 127.244 kb on + strand, within GFF6332at 127.244 kb on + strand, within GFF6332at 127.244 kb on + strand, within GFF6332at 127.244 kb on + strand, within GFF6332at 127.244 kb on + strand, within GFF6332at 127.244 kb on + strand, within GFF6332at 127.245 kb on - strand, within GFF6332at 127.245 kb on - strand, within GFF6332at 127.245 kb on - strand, within GFF6332at 127.247 kb on + strand, within GFF6332at 127.247 kb on + strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.469 kb on + strand, within GFF6332at 127.469 kb on + strand, within GFF6332at 127.470 kb on - strand, within GFF6332at 127.470 kb on - strand, within GFF6332at 127.470 kb on - strand, within GFF6332at 127.491 kb on - strand, within GFF6332at 127.613 kb on + strand, within GFF6332at 127.613 kb on + strand, within GFF6332at 127.613 kb on + strand, within GFF6332at 127.613 kb on + strand, within GFF6332at 127.614 kb on - strand, within GFF6332at 127.614 kb on - strand, within GFF6332at 127.614 kb on - strand, within GFF6332at 127.614 kb on - strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.647 kb on - strand, within GFF6332at 127.647 kb on - strand, within GFF6332at 127.874 kb on + strand, within GFF6332at 127.874 kb on + strand, within GFF6332at 127.874 kb on + strand, within GFF6332at 127.874 kb on + strand, within GFF6332at 127.874 kb on + strand, within GFF6332at 127.875 kb on - strand, within GFF6332at 127.875 kb on - strand, within GFF6332at 127.875 kb on - strand, within GFF6332at 127.875 kb on - strand, within GFF6332at 127.875 kb on - strand, within GFF6332at 127.875 kb on - strand, within GFF6332at 127.937 kb on + strand, within GFF6332at 127.937 kb on + strand, within GFF6332at 127.937 kb on + strand, within GFF6332at 128.054 kb on + strand, within GFF6332at 128.054 kb on + strand, within GFF6332at 128.055 kb on - strand, within GFF6332at 128.055 kb on - strand, within GFF6332at 128.387 kb on + strandat 128.686 kb on + strand, within GFF6333at 128.687 kb on - strand, within GFF6333at 128.687 kb on - strand, within GFF6333at 128.687 kb on - strand, within GFF6333at 129.004 kb on + strand, within GFF6333at 129.004 kb on + strand, within GFF6333at 129.005 kb on - strand, within GFF6333at 129.005 kb on - strand, within GFF6333at 129.005 kb on - strand, within GFF6333at 129.005 kb on - strand, within GFF6333at 129.178 kb on + strand, within GFF6333at 129.178 kb on + strand, within GFF6333at 129.178 kb on + strand, within GFF6333at 129.178 kb on + strand, within GFF6333at 129.178 kb on + strand, within GFF6333at 129.178 kb on + strand, within GFF6333at 129.178 kb on + strand, within GFF6333at 129.179 kb on - strand, within GFF6333at 129.179 kb on - strand, within GFF6333at 129.179 kb on - strand, within GFF6333at 129.179 kb on - strand, within GFF6333at 129.179 kb on - strand, within GFF6333at 129.236 kb on - strand, within GFF6333at 129.265 kb on + strand, within GFF6333at 129.265 kb on + strand, within GFF6333at 129.265 kb on + strand, within GFF6333at 129.265 kb on + strand, within GFF6333at 129.266 kb on - strand, within GFF6333at 129.266 kb on - strand, within GFF6333at 129.266 kb on - strand, within GFF6333at 129.340 kb on + strand, within GFF6333

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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125,807 + GFF6331 0.21 -0.3
125,807 + GFF6331 0.21 -0.7
125,807 + GFF6331 0.21 +0.6
125,807 + GFF6331 0.21 -1.5
125,807 + GFF6331 0.21 -0.8
125,807 + GFF6331 0.21 -0.1
125,807 + GFF6331 0.21 -0.1
125,807 + GFF6331 0.21 -1.1
125,808 - GFF6331 0.21 -0.0
125,808 - GFF6331 0.21 +0.8
125,808 - GFF6331 0.21 -0.6
125,808 - GFF6331 0.21 -0.6
125,808 - GFF6331 0.21 +1.0
125,808 - GFF6331 0.21 -0.2
125,808 - GFF6331 0.21 +0.1
125,920 + GFF6331 0.32 -0.2
125,920 + GFF6331 0.32 -1.7
125,920 + GFF6331 0.32 -0.2
125,920 + GFF6331 0.32 +0.1
125,920 + GFF6331 0.32 -1.3
125,921 - GFF6331 0.32 +0.1
125,921 - GFF6331 0.32 +0.1
125,921 - GFF6331 0.32 -1.0
125,921 - GFF6331 0.32 -0.4
125,921 - GFF6331 0.32 +0.4
126,069 + GFF6331 0.46 +0.2
126,070 - GFF6331 0.46 -0.1
126,235 + GFF6331 0.61 -0.0
126,236 - GFF6331 0.61 +0.6
126,318 - GFF6331 0.69 -0.2
126,318 - GFF6331 0.69 +0.8
126,448 + GFF6331 0.81 +1.4
126,448 + GFF6331 0.81 +0.4
126,448 + GFF6331 0.81 -0.5
126,449 - GFF6331 0.81 +1.2
126,449 - GFF6331 0.81 -1.4
126,449 - GFF6331 0.81 -1.3
126,449 - GFF6331 0.81 -0.2
126,469 + GFF6331 0.83 +0.8
126,469 + GFF6331 0.83 -0.2
126,692 - -0.6
126,803 + +0.3
126,803 + -0.4
126,803 + +0.2
126,803 + +0.0
126,804 - +0.5
126,812 + -0.7
126,812 + +1.8
126,812 + -0.0
126,813 - +0.1
126,813 - -0.2
127,145 + GFF6332 0.24 +0.5
127,145 + GFF6332 0.24 -0.6
127,145 + GFF6332 0.24 -1.1
127,145 + GFF6332 0.24 +1.8
127,145 + GFF6332 0.24 -0.8
127,145 + GFF6332 0.24 -1.3
127,145 + GFF6332 0.24 +0.7
127,145 + GFF6332 0.24 -0.2
127,145 + GFF6332 0.24 -0.6
127,146 - GFF6332 0.24 -2.2
127,146 - GFF6332 0.24 -0.3
127,146 - GFF6332 0.24 -1.1
127,146 - GFF6332 0.24 -0.0
127,244 + GFF6332 0.29 -1.3
127,244 + GFF6332 0.29 +0.4
127,244 + GFF6332 0.29 -0.4
127,244 + GFF6332 0.29 -0.6
127,244 + GFF6332 0.29 +0.3
127,244 + GFF6332 0.29 -0.8
127,245 - GFF6332 0.30 +0.2
127,245 - GFF6332 0.30 -0.2
127,245 - GFF6332 0.30 -0.3
127,247 + GFF6332 0.30 -1.0
127,247 + GFF6332 0.30 -0.4
127,248 - GFF6332 0.30 -0.7
127,248 - GFF6332 0.30 -0.4
127,248 - GFF6332 0.30 -0.1
127,248 - GFF6332 0.30 -0.6
127,248 - GFF6332 0.30 -0.0
127,248 - GFF6332 0.30 -1.0
127,248 - GFF6332 0.30 +0.2
127,248 - GFF6332 0.30 +0.0
127,248 - GFF6332 0.30 +3.8
127,248 - GFF6332 0.30 +0.1
127,248 - GFF6332 0.30 -1.9
127,248 - GFF6332 0.30 -0.4
127,469 + GFF6332 0.43 -1.9
127,469 + GFF6332 0.43 -0.3
127,470 - GFF6332 0.43 +0.1
127,470 - GFF6332 0.43 -0.1
127,470 - GFF6332 0.43 -1.2
127,491 - GFF6332 0.44 +0.3
127,613 + GFF6332 0.51 +0.2
127,613 + GFF6332 0.51 +0.0
127,613 + GFF6332 0.51 -0.5
127,613 + GFF6332 0.51 -0.2
127,614 - GFF6332 0.51 -0.2
127,614 - GFF6332 0.51 -1.1
127,614 - GFF6332 0.51 -0.2
127,614 - GFF6332 0.51 -0.8
127,646 + GFF6332 0.53 -1.6
127,646 + GFF6332 0.53 -1.6
127,646 + GFF6332 0.53 -0.0
127,646 + GFF6332 0.53 -0.0
127,646 + GFF6332 0.53 -1.4
127,646 + GFF6332 0.53 -0.6
127,647 - GFF6332 0.53 +0.0
127,647 - GFF6332 0.53 -0.5
127,874 + GFF6332 0.67 +0.8
127,874 + GFF6332 0.67 +0.9
127,874 + GFF6332 0.67 +0.6
127,874 + GFF6332 0.67 -0.1
127,874 + GFF6332 0.67 -0.8
127,875 - GFF6332 0.67 +0.1
127,875 - GFF6332 0.67 -0.9
127,875 - GFF6332 0.67 -0.4
127,875 - GFF6332 0.67 +0.3
127,875 - GFF6332 0.67 -0.9
127,875 - GFF6332 0.67 +0.5
127,937 + GFF6332 0.71 +1.0
127,937 + GFF6332 0.71 -0.3
127,937 + GFF6332 0.71 +0.7
128,054 + GFF6332 0.77 -0.1
128,054 + GFF6332 0.77 +0.5
128,055 - GFF6332 0.78 +0.1
128,055 - GFF6332 0.78 -0.5
128,387 + +0.8
128,686 + GFF6333 0.11 -0.1
128,687 - GFF6333 0.11 -0.5
128,687 - GFF6333 0.11 -0.4
128,687 - GFF6333 0.11 -0.8
129,004 + GFF6333 0.26 -1.5
129,004 + GFF6333 0.26 -0.6
129,005 - GFF6333 0.26 -0.3
129,005 - GFF6333 0.26 -0.6
129,005 - GFF6333 0.26 -0.7
129,005 - GFF6333 0.26 +0.1
129,178 + GFF6333 0.34 +0.2
129,178 + GFF6333 0.34 +0.2
129,178 + GFF6333 0.34 -0.9
129,178 + GFF6333 0.34 -0.4
129,178 + GFF6333 0.34 -1.0
129,178 + GFF6333 0.34 -0.2
129,178 + GFF6333 0.34 -0.9
129,179 - GFF6333 0.34 +0.0
129,179 - GFF6333 0.34 -2.0
129,179 - GFF6333 0.34 +0.4
129,179 - GFF6333 0.34 +0.2
129,179 - GFF6333 0.34 -0.9
129,236 - GFF6333 0.37 -1.2
129,265 + GFF6333 0.38 +1.2
129,265 + GFF6333 0.38 +0.5
129,265 + GFF6333 0.38 -1.6
129,265 + GFF6333 0.38 +0.0
129,266 - GFF6333 0.38 -0.0
129,266 - GFF6333 0.38 +0.5
129,266 - GFF6333 0.38 -1.5
129,340 + GFF6333 0.41 -0.5

Or see this region's nucleotide sequence