Strain Fitness in Variovorax sp. SCN45 around GFF6314

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
101,831	+				-0.9
101,831	+				+0.2
101,832	-				+0.4
101,832	-				-0.1
101,832	-				-1.3
101,832	-				-0.2
101,832	-				-0.8
102,190	+		GFF6313	0.48	-0.2
102,190	+		GFF6313	0.48	-1.2
102,190	+		GFF6313	0.48	+1.5
102,190	+		GFF6313	0.48	+1.2
102,190	+		GFF6313	0.48	+0.2
102,190	+		GFF6313	0.48	-0.3
102,191	-		GFF6313	0.48	-0.2
102,191	-		GFF6313	0.48	+2.8
102,191	-		GFF6313	0.48	-1.1
102,191	-		GFF6313	0.48	-0.6
102,191	-		GFF6313	0.48	-0.1
102,191	-		GFF6313	0.48	+0.2
102,191	-		GFF6313	0.48	-1.1
102,191	-		GFF6313	0.48	+0.1
102,191	-		GFF6313	0.48	-1.2
102,191	-		GFF6313	0.48	+0.1
102,191	-		GFF6313	0.48	-0.4
102,191	-		GFF6313	0.48	+1.1
102,191	-		GFF6313	0.48	-1.8
102,191	-		GFF6313	0.48	+0.2
102,191	-		GFF6313	0.48	+0.4
102,191	-		GFF6313	0.48	+0.5
102,209	+		GFF6313	0.50	+0.8
102,209	+		GFF6313	0.50	+0.4
102,209	+		GFF6313	0.50	+0.5
102,209	+		GFF6313	0.50	+0.8
102,209	+		GFF6313	0.50	-0.5
102,209	+		GFF6313	0.50	-0.3
102,209	+		GFF6313	0.50	+0.1
102,209	+		GFF6313	0.50	-0.8
102,209	+		GFF6313	0.50	-0.5
102,210	-		GFF6313	0.50	-0.5
102,210	-		GFF6313	0.50	-0.6
102,210	-		GFF6313	0.50	-0.5
102,210	-		GFF6313	0.50	-0.4
102,210	-		GFF6313	0.50	-1.6
102,210	-		GFF6313	0.50	-0.5
102,210	-		GFF6313	0.50	+0.8
102,210	-		GFF6313	0.50	-0.6
102,210	-		GFF6313	0.50	-0.2
102,210	-		GFF6313	0.50	-0.5
102,215	+		GFF6313	0.51	+1.1
102,215	+		GFF6313	0.51	-0.6
102,215	+		GFF6313	0.51	+1.4
102,215	+		GFF6313	0.51	-1.9
102,215	+		GFF6313	0.51	-2.8
102,215	+		GFF6313	0.51	-0.4
102,215	+		GFF6313	0.51	+0.4
102,215	+		GFF6313	0.51	+0.8
102,215	+		GFF6313	0.51	-2.2
102,215	+		GFF6313	0.51	+0.8
102,215	+		GFF6313	0.51	-0.4
102,215	+		GFF6313	0.51	-0.3
102,215	+		GFF6313	0.51	+0.8
102,215	+		GFF6313	0.51	-0.6
102,215	+		GFF6313	0.51	-0.1
102,216	-		GFF6313	0.51	-0.3
102,216	-		GFF6313	0.51	-0.3
102,216	-		GFF6313	0.51	-0.1
102,216	-		GFF6313	0.51	-0.1
102,216	-		GFF6313	0.51	-0.3
102,216	-		GFF6313	0.51	-0.8
102,216	-		GFF6313	0.51	-0.5
102,216	-		GFF6313	0.51	-0.2
102,216	-		GFF6313	0.51	-0.6
102,216	-		GFF6313	0.51	+0.6
102,216	-		GFF6313	0.51	-0.4
102,216	-		GFF6313	0.51	-0.3
102,216	-		GFF6313	0.51	+1.3
102,216	-		GFF6313	0.51	-0.8
102,509	+		GFF6313	0.87	-0.4
102,509	+		GFF6313	0.87	+1.5
102,509	+		GFF6313	0.87	-0.8
102,509	+		GFF6313	0.87	+1.8
102,509	+		GFF6313	0.87	+0.6
102,509	+		GFF6313	0.87	+0.4
102,509	+		GFF6313	0.87	+1.6
102,510	-		GFF6313	0.87	-0.2
102,510	-		GFF6313	0.87	-0.0
102,510	-		GFF6313	0.87	-0.3
102,510	-		GFF6313	0.87	+1.5
102,510	-		GFF6313	0.87	-0.2
102,510	-		GFF6313	0.87	-0.9
102,510	-		GFF6313	0.87	-0.7
102,510	-		GFF6313	0.87	-0.5
102,510	-		GFF6313	0.87	-1.3
102,510	-		GFF6313	0.87	-1.1
102,510	-		GFF6313	0.87	-0.6
102,510	-		GFF6313	0.87	-0.5
102,510	-		GFF6313	0.87	-0.4
102,510	-		GFF6313	0.87	-1.0
102,671	+				+0.6
102,671	+				-0.2
102,671	+				+0.2
102,671	+				+1.5
102,671	+				-0.1
102,671	+				+0.2
102,671	+				+1.4
102,671	+				-0.1
102,672	-				-0.3
102,672	-				-0.1
102,672	-				-0.3
102,672	-				+0.1
102,672	-				+0.2
102,672	-				+0.7
102,692	+				+0.5
102,692	+				-1.2
102,692	+				-0.6
102,692	+				-0.6
102,693	-				+0.8
102,693	-				+0.4
102,693	-				+0.7
102,693	-				-0.5
102,693	-				-1.0
102,693	-				-0.3
102,693	-				+0.1
102,693	-				+0.4
102,693	-				-0.0
102,693	-				+0.2
102,693	-				+0.2
102,726	+				-0.2
102,726	+				-0.5
102,726	+				-0.0
102,726	+				+0.4
102,726	+				-0.5
102,726	+				-0.9
102,727	-				+1.8
102,727	-				-0.7
102,727	-				+0.4
102,727	-				-0.6
102,727	-				+0.1
102,727	-				+0.8
102,727	-				-1.0
102,727	-				-1.0
102,776	+				-0.1
102,776	+				-2.3
102,776	+				-0.2
102,776	+				+0.7
102,776	+				+0.4
102,776	+				+0.0
102,776	+				-0.5
102,776	+				-1.2
102,776	+				+0.5
102,776	+				-0.6
102,776	+				+0.0
102,776	+				-0.5
102,776	+				-1.6
102,777	-				+0.7
102,777	-				+0.1
102,777	-				+0.8
102,777	-				-0.2
102,777	-				+0.3
102,777	-				-0.4
102,777	-				-0.3
102,777	-				+1.1
102,777	-				+0.3
102,777	-				-1.0
102,777	-				+0.3
102,777	-				-0.5
102,777	-				+0.5
102,777	-				+1.5
102,777	-				-1.6
102,778	+				-0.4
102,778	+				-0.5
102,778	+				-0.5
102,778	+				-1.3
102,778	+				+0.2
102,778	+				-1.0
102,778	+				-0.5
102,778	+				-0.3
102,778	+				+0.1
102,778	+				-0.3
102,778	+				+0.1
102,778	+				-0.8
102,778	+				-0.5
102,778	+				-0.2
102,778	+				+0.1
102,778	+				+0.6
102,778	+				-1.5
102,778	+				-1.6
102,778	+				+0.5
102,778	+				-0.1
102,778	+				-0.1
102,778	+				-0.4
102,778	+				+1.3
102,778	+				-0.5
102,778	+				+0.3
102,779	-				-0.2
102,779	-				+1.5
102,779	-				+0.3
102,779	-				+0.8
102,779	-				+0.2
102,779	-				-0.5
102,779	-				+1.0
102,779	-				-0.2
102,779	-				-1.2
102,779	-				-1.5
102,779	-				+0.9
102,779	-				-0.3
102,779	-				+0.0
102,779	-				-0.3
102,779	-				-0.9
102,779	-				+0.3
102,779	-				+0.5
102,779	-				-0.7
102,779	-				+0.1
102,779	-				+1.0
102,779	-				-0.4
102,779	-				-0.8
102,779	-				-1.8
102,779	-				-0.8
102,779	-				-0.6
102,779	-				-0.2
102,779	-				+0.3
102,779	-				+1.8
102,805	+				+2.4
102,805	+				-0.4
102,805	+				-0.8
102,806	-				+0.3
102,948	+		GFF6314	0.38	+0.4
102,948	+		GFF6314	0.38	+1.8
102,948	+		GFF6314	0.38	-1.1
102,948	+		GFF6314	0.38	-0.5
102,948	+		GFF6314	0.38	+1.2
102,948	+		GFF6314	0.38	+0.1
102,948	+		GFF6314	0.38	+0.2
102,948	+		GFF6314	0.38	-0.1
102,948	+		GFF6314	0.38	-0.2
102,948	+		GFF6314	0.38	-0.3
102,948	+		GFF6314	0.38	+0.5
102,948	+		GFF6314	0.38	+0.0
102,949	-		GFF6314	0.38	+0.1
102,949	-		GFF6314	0.38	-0.2
102,949	-		GFF6314	0.38	+0.1
102,949	-		GFF6314	0.38	+0.4
102,949	-		GFF6314	0.38	-0.5
102,949	-		GFF6314	0.38	+1.0
102,949	-		GFF6314	0.38	+0.7
102,949	-		GFF6314	0.38	-0.6
102,949	-		GFF6314	0.38	+0.0
102,949	-		GFF6314	0.38	+1.2
102,949	-		GFF6314	0.38	+0.8
102,949	-		GFF6314	0.38	-1.1
102,949	-		GFF6314	0.38	+1.1
102,949	-		GFF6314	0.38	+0.0
102,949	-		GFF6314	0.38	+0.0
102,949	-		GFF6314	0.38	-0.7
102,949	-		GFF6314	0.38	+0.6
102,949	-		GFF6314	0.38	-1.0
103,011	+		GFF6314	0.56	-0.1
103,011	+		GFF6314	0.56	+1.2
103,011	+		GFF6314	0.56	+0.4
103,011	+		GFF6314	0.56	-0.8
103,011	+		GFF6314	0.56	-1.0
103,011	+		GFF6314	0.56	-0.4
103,011	+		GFF6314	0.56	+0.2
103,011	+		GFF6314	0.56	-0.5
103,011	+		GFF6314	0.56	-0.0
103,012	-		GFF6314	0.56	-1.6
103,012	-		GFF6314	0.56	+0.8
103,012	-		GFF6314	0.56	+0.3
103,012	-		GFF6314	0.56	-1.0
103,012	-		GFF6314	0.56	+0.6
103,012	-		GFF6314	0.56	-0.3
103,012	-		GFF6314	0.56	-0.1
103,012	-		GFF6314	0.56	-0.0
103,078	+		GFF6314	0.75	+0.2
103,079	-		GFF6314	0.75	-1.8
103,231	+				+0.2
103,231	+				+0.4
103,231	+				-0.2
103,231	+				-0.4
103,231	+				+1.3
103,231	+				-0.4
103,231	+				-0.5
103,231	+				+0.1
103,231	+				-0.4
103,231	+				-0.6
103,231	+				+0.0
103,231	+				-0.3
103,231	+				+0.2
103,232	-				+0.4
103,232	-				+1.4
103,232	-				-0.2
103,232	-				+0.7
103,232	-				+0.5
103,232	-				+0.2
103,232	-				-0.1
103,232	-				+0.8
103,267	+				-0.3
103,267	+				-0.6
103,267	+				+0.7
103,267	+				+0.3
103,267	+				-0.6
103,267	+				-1.3
103,268	-				+0.7
103,268	-				-1.6
103,268	-				-0.1
103,285	+				+0.5
103,285	+				+2.2
103,285	+				+0.2
103,285	+				+0.1
103,285	+				-0.5
103,285	+				+0.5
103,286	-				-0.3
103,286	-				+0.5
103,286	-				+0.7
103,286	-				-0.6
103,286	-				-1.3
103,286	-				+0.4
103,286	-				+0.1
103,286	-				+0.4
103,350	+				-0.2
103,351	-				+0.7
103,351	-				-0.4
103,358	+				-1.4
103,358	+				-0.9
103,358	+				-0.3
103,358	+				+0.9
103,358	+				+0.0
103,359	-				-0.1
103,359	-				-0.0
103,364	+				-0.3
103,364	+				-0.3
103,365	-				-0.7
103,371	+				-0.3
103,372	-				+0.2
103,393	+				+0.3
103,394	-				+0.1
103,394	-				-0.8
103,394	-				-0.7
103,404	+				-0.3
103,404	+				-0.0
103,404	+				-1.3
103,405	-				-1.6
103,405	-				-0.6
103,433	+				+0.5
103,433	+				-0.4
103,433	+				-0.9
103,433	+				-0.8
103,433	+				+0.7
103,434	-				-0.2
103,434	-				-0.2
103,434	-				-0.6
103,434	-				-0.2
103,434	-				-0.3
103,452	-				-0.7
103,452	-				+0.5
103,452	-				+0.5
103,484	+				-0.6
103,484	+				+0.5
103,484	+				-0.8
103,485	-				+0.1
103,520	+				+0.0
103,521	-				+2.1
103,521	-				-0.5
103,521	-				-1.2
103,521	-				-1.2
103,521	-				-0.6
103,559	+				-0.6
103,559	+				+0.7
103,559	+				+0.4
103,559	+				+1.0
103,560	-				+0.3
103,560	-				-0.6
103,575	-				+1.4
103,586	+				+1.1
103,586	+				-0.2
103,586	+				-0.3
103,587	-				-0.5
103,587	-				-0.8
103,587	-				+0.4
103,598	+				-0.3
103,598	+				-1.2
103,598	+				+0.2
103,598	+				-0.3
103,599	-				+1.4
103,607	+				+0.9
103,607	+				-0.0
103,607	+				-0.5
103,607	+				+0.1
103,607	+				-0.6
103,607	+				+1.8
103,607	+				+0.6
103,608	-				-0.8
103,608	-				-1.1
103,608	-				-0.9
103,608	-				+0.2
103,608	-				-0.8
103,608	-				+1.2
103,619	+				-0.5
103,653	+				-1.3
103,653	+				+0.0
103,653	+				+0.3
103,653	+				+0.1
103,653	+				-0.1
103,653	+				-0.8
103,654	-				-1.2
103,654	-				-1.0
103,744	+				-0.0
103,744	+				-1.9
103,744	+				+0.2
103,744	+				+0.5
103,744	+				+0.2
103,744	+				+1.2
103,745	-				+0.5
103,745	-				-1.6
103,745	-				-0.6
103,745	-				-0.4
103,753	+				-0.3
103,753	+				-0.1
103,754	-				-1.4
103,754	-				-2.1
103,781	+				-0.1
103,782	-				-0.5
103,782	-				-0.7
103,782	-				-0.6
103,782	-				-0.1
103,782	-				-0.1
103,782	-				-0.2
103,861	+				-0.2
103,861	+				-0.4
103,862	-				-0.2
103,867	-				+0.5
103,867	-				+0.8
103,872	+				-0.3
103,872	+				-1.0
103,873	-				+0.2
103,873	-				-0.6
103,873	-				+0.2
103,877	-				+0.8
103,908	+				+0.5
103,908	+				-0.5
103,909	-				+0.0
103,909	-				-0.2
103,914	+				+0.1
103,962	+				+0.2
104,051	+				-0.7
104,051	+				+2.8
104,051	+				-0.3
104,051	+				-0.8
104,051	+				-0.0
104,052	-				-0.9
104,052	-				+0.2
104,052	-				+0.8
104,052	-				-0.1
104,052	-				-0.3
104,052	-				-0.2
104,052	-				+1.2
104,052	-				-0.2
104,052	-				-0.0
104,052	-				+0.8
104,069	+				-0.7
104,069	+				-0.0
104,069	+				-0.8
104,069	+				-0.2
104,069	+				+0.1
104,069	+				-1.0
104,070	-				-1.6
104,070	-				-1.0
104,070	-				-0.1
104,070	-				+0.3
104,070	-				-0.6
104,071	+				-0.2
104,071	+				-0.5
104,071	+				+0.0
104,071	+				+1.5
104,071	+				+0.2
104,072	-				-1.2
104,136	+				+1.8
104,136	+				+0.2
104,144	+				+0.0
104,144	+				+0.0
104,144	+				-0.4
104,144	+				-0.5
104,145	-				+0.2