Strain Fitness in Variovorax sp. SCN45 around GFF6301

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6300 and GFF6301 overlap by 8 nucleotidesGFF6301 and GFF6302 are separated by 126 nucleotidesGFF6302 and GFF6303 are separated by 46 nucleotides GFF6300 - CaiB/BaiF family protein, at 89,072 to 90,262 GFF6300 GFF6301 - Pyruvate:Oxaloacetate transcarboxylase domain protein, at 90,255 to 91,193 GFF6301 GFF6302 - Transcriptional regulator, IclR family, at 91,320 to 92,060 GFF6302 GFF6303 - BUG/TctC family periplasmic protein, at 92,107 to 93,078 GFF6303 Position (kb) 90 91 92Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 89.568 kb on + strand, within GFF6300at 89.568 kb on + strand, within GFF6300at 89.568 kb on + strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.871 kb on + strand, within GFF6300at 89.871 kb on + strand, within GFF6300at 89.871 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.940 kb on + strand, within GFF6300at 89.940 kb on + strand, within GFF6300at 89.941 kb on - strand, within GFF6300at 89.941 kb on - strand, within GFF6300at 89.941 kb on - strand, within GFF6300at 90.237 kb on + strandat 90.237 kb on + strandat 90.237 kb on + strandat 90.237 kb on + strandat 90.238 kb on - strandat 90.322 kb on + strandat 90.322 kb on + strandat 90.323 kb on - strandat 90.323 kb on - strandat 90.323 kb on - strandat 90.466 kb on + strand, within GFF6301at 90.466 kb on + strand, within GFF6301at 90.467 kb on - strand, within GFF6301at 90.467 kb on - strand, within GFF6301at 90.467 kb on - strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.647 kb on - strand, within GFF6301at 91.084 kb on + strand, within GFF6301at 91.084 kb on + strand, within GFF6301at 91.084 kb on + strand, within GFF6301at 91.085 kb on - strand, within GFF6301at 91.085 kb on - strand, within GFF6301at 91.085 kb on - strand, within GFF6301at 91.271 kb on - strandat 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.548 kb on + strand, within GFF6302at 91.548 kb on + strand, within GFF6302at 91.549 kb on - strand, within GFF6302at 91.549 kb on - strand, within GFF6302at 91.549 kb on - strand, within GFF6302at 91.587 kb on + strand, within GFF6302at 91.587 kb on + strand, within GFF6302at 91.587 kb on + strand, within GFF6302at 91.587 kb on + strand, within GFF6302at 91.587 kb on + strand, within GFF6302at 91.588 kb on - strand, within GFF6302at 91.588 kb on - strand, within GFF6302at 91.588 kb on - strand, within GFF6302at 91.588 kb on - strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.861 kb on - strand, within GFF6302at 91.861 kb on - strand, within GFF6302at 91.861 kb on - strand, within GFF6302at 91.861 kb on - strand, within GFF6302at 91.861 kb on - strand, within GFF6302at 91.998 kb on + strandat 91.998 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.011 kb on - strandat 92.011 kb on - strandat 92.011 kb on - strandat 92.011 kb on - strandat 92.011 kb on - strandat 92.011 kb on - strandat 92.173 kb on + strandat 92.173 kb on + strandat 92.173 kb on + strandat 92.174 kb on - strandat 92.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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89,568 + GFF6300 0.42 +0.2
89,568 + GFF6300 0.42 -0.6
89,568 + GFF6300 0.42 -0.5
89,569 - GFF6300 0.42 -0.5
89,569 - GFF6300 0.42 +0.6
89,569 - GFF6300 0.42 -1.8
89,569 - GFF6300 0.42 +0.2
89,569 - GFF6300 0.42 -0.6
89,569 - GFF6300 0.42 +0.3
89,569 - GFF6300 0.42 -0.8
89,569 - GFF6300 0.42 -0.2
89,569 - GFF6300 0.42 -1.5
89,569 - GFF6300 0.42 -0.3
89,818 - GFF6300 0.63 -0.1
89,818 - GFF6300 0.63 +0.3
89,818 - GFF6300 0.63 -0.1
89,818 - GFF6300 0.63 -0.8
89,818 - GFF6300 0.63 +0.1
89,818 - GFF6300 0.63 -1.5
89,818 - GFF6300 0.63 -0.8
89,818 - GFF6300 0.63 -0.1
89,818 - GFF6300 0.63 -1.0
89,818 - GFF6300 0.63 -0.1
89,818 - GFF6300 0.63 -0.5
89,818 - GFF6300 0.63 +0.3
89,818 - GFF6300 0.63 -0.6
89,871 + GFF6300 0.67 +0.0
89,871 + GFF6300 0.67 +0.4
89,871 + GFF6300 0.67 +0.2
89,904 + GFF6300 0.70 +0.1
89,904 + GFF6300 0.70 +0.3
89,904 + GFF6300 0.70 +1.1
89,904 + GFF6300 0.70 +0.2
89,904 + GFF6300 0.70 -0.3
89,904 + GFF6300 0.70 -0.9
89,904 + GFF6300 0.70 -1.5
89,904 + GFF6300 0.70 -0.6
89,904 + GFF6300 0.70 -0.0
89,904 + GFF6300 0.70 +0.8
89,904 + GFF6300 0.70 -1.0
89,904 + GFF6300 0.70 -0.2
89,904 + GFF6300 0.70 +0.4
89,904 + GFF6300 0.70 +0.4
89,904 + GFF6300 0.70 -0.4
89,904 + GFF6300 0.70 +0.2
89,904 + GFF6300 0.70 -0.9
89,905 - GFF6300 0.70 -0.3
89,905 - GFF6300 0.70 +0.1
89,905 - GFF6300 0.70 -0.2
89,905 - GFF6300 0.70 +0.1
89,905 - GFF6300 0.70 +0.0
89,905 - GFF6300 0.70 +0.8
89,905 - GFF6300 0.70 -0.6
89,905 - GFF6300 0.70 -1.7
89,905 - GFF6300 0.70 +1.0
89,905 - GFF6300 0.70 -0.5
89,905 - GFF6300 0.70 -0.3
89,905 - GFF6300 0.70 +0.5
89,905 - GFF6300 0.70 -0.2
89,905 - GFF6300 0.70 -0.5
89,905 - GFF6300 0.70 +0.2
89,905 - GFF6300 0.70 -0.3
89,940 + GFF6300 0.73 -1.6
89,940 + GFF6300 0.73 +0.6
89,941 - GFF6300 0.73 -0.3
89,941 - GFF6300 0.73 +0.1
89,941 - GFF6300 0.73 +0.1
90,237 + -0.4
90,237 + -0.7
90,237 + -0.2
90,237 + +0.2
90,238 - -0.2
90,322 + +1.1
90,322 + -0.7
90,323 - -0.0
90,323 - -1.2
90,323 - -0.6
90,466 + GFF6301 0.22 -1.0
90,466 + GFF6301 0.22 -1.0
90,467 - GFF6301 0.23 +0.0
90,467 - GFF6301 0.23 -0.4
90,467 - GFF6301 0.23 -0.1
90,646 + GFF6301 0.42 -0.3
90,646 + GFF6301 0.42 +0.1
90,646 + GFF6301 0.42 -0.2
90,646 + GFF6301 0.42 -0.9
90,646 + GFF6301 0.42 -0.5
90,646 + GFF6301 0.42 +0.4
90,646 + GFF6301 0.42 +0.2
90,647 - GFF6301 0.42 -0.8
91,084 + GFF6301 0.88 -0.3
91,084 + GFF6301 0.88 -0.7
91,084 + GFF6301 0.88 -0.2
91,085 - GFF6301 0.88 +0.1
91,085 - GFF6301 0.88 -0.0
91,085 - GFF6301 0.88 -0.8
91,271 - +0.6
91,473 + GFF6302 0.21 -1.8
91,473 + GFF6302 0.21 +0.0
91,473 + GFF6302 0.21 -0.1
91,473 + GFF6302 0.21 -0.8
91,473 + GFF6302 0.21 -0.4
91,473 + GFF6302 0.21 -1.7
91,473 + GFF6302 0.21 -0.4
91,473 + GFF6302 0.21 -0.7
91,473 + GFF6302 0.21 -0.4
91,474 - GFF6302 0.21 -1.1
91,474 - GFF6302 0.21 -0.3
91,474 - GFF6302 0.21 +1.8
91,474 - GFF6302 0.21 -2.0
91,474 - GFF6302 0.21 -1.4
91,474 - GFF6302 0.21 -1.0
91,474 - GFF6302 0.21 -2.6
91,474 - GFF6302 0.21 -0.9
91,474 - GFF6302 0.21 -0.9
91,474 - GFF6302 0.21 -0.1
91,474 - GFF6302 0.21 +0.8
91,474 - GFF6302 0.21 -0.8
91,548 + GFF6302 0.31 -0.6
91,548 + GFF6302 0.31 +0.3
91,549 - GFF6302 0.31 -0.8
91,549 - GFF6302 0.31 +2.2
91,549 - GFF6302 0.31 -0.9
91,587 + GFF6302 0.36 -0.7
91,587 + GFF6302 0.36 +0.2
91,587 + GFF6302 0.36 -0.6
91,587 + GFF6302 0.36 -0.8
91,587 + GFF6302 0.36 +0.6
91,588 - GFF6302 0.36 -0.2
91,588 - GFF6302 0.36 -0.4
91,588 - GFF6302 0.36 -0.7
91,588 - GFF6302 0.36 +0.1
91,668 + GFF6302 0.47 -3.5
91,668 + GFF6302 0.47 +0.2
91,668 + GFF6302 0.47 -0.5
91,668 + GFF6302 0.47 -0.3
91,668 + GFF6302 0.47 +0.2
91,668 + GFF6302 0.47 +1.2
91,669 - GFF6302 0.47 -0.5
91,669 - GFF6302 0.47 -0.0
91,669 - GFF6302 0.47 -1.3
91,669 - GFF6302 0.47 -0.8
91,669 - GFF6302 0.47 -1.0
91,669 - GFF6302 0.47 +0.2
91,669 - GFF6302 0.47 -0.4
91,669 - GFF6302 0.47 -0.3
91,860 + GFF6302 0.73 -0.9
91,860 + GFF6302 0.73 -0.8
91,860 + GFF6302 0.73 -0.3
91,860 + GFF6302 0.73 -0.2
91,860 + GFF6302 0.73 -2.9
91,860 + GFF6302 0.73 +0.8
91,860 + GFF6302 0.73 -1.3
91,861 - GFF6302 0.73 -0.7
91,861 - GFF6302 0.73 +0.1
91,861 - GFF6302 0.73 +0.2
91,861 - GFF6302 0.73 +0.2
91,861 - GFF6302 0.73 -0.6
91,998 + -0.9
91,998 + -0.7
92,010 + -2.6
92,010 + -0.9
92,010 + -0.2
92,010 + -0.3
92,010 + -0.5
92,010 + -0.0
92,010 + +0.1
92,010 + -0.5
92,010 + -0.5
92,011 - +1.0
92,011 - -0.7
92,011 - -0.4
92,011 - -1.6
92,011 - +0.2
92,011 - -0.5
92,173 + -0.0
92,173 + +0.0
92,173 + +0.9
92,174 - -0.3
92,174 - -0.4

Or see this region's nucleotide sequence