Strain Fitness in Variovorax sp. SCN45 around GFF6232

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
15,810	+		GFF6231	0.27	-0.2
15,811	-		GFF6231	0.27	-0.2
15,998	+		GFF6231	0.56	-1.4
15,999	-		GFF6231	0.57	+0.8
15,999	-		GFF6231	0.57	-0.9
16,031	+		GFF6231	0.62	-0.1
16,032	-		GFF6231	0.62	+0.3
16,032	-		GFF6231	0.62	+0.8
16,032	-		GFF6231	0.62	-0.8
16,095	-		GFF6231	0.72	-0.2
16,095	-		GFF6231	0.72	-0.3
16,455	+				+0.3
16,455	+				-0.3
16,456	-				-0.4
16,456	-				-0.9
16,551	+				-0.8
16,552	-				+0.1
16,552	-				-0.4
16,758	+				-0.5
16,759	-				+0.0
16,759	-				-0.3
16,821	+				-0.3
16,821	+				-0.5
16,833	+		GFF6232	0.10	+0.3
16,833	+		GFF6232	0.10	+0.3
16,833	+		GFF6232	0.10	+0.2
16,834	-		GFF6232	0.10	+0.1
16,917	+		GFF6232	0.12	-0.3
16,918	-		GFF6232	0.12	-1.2
16,918	-		GFF6232	0.12	-0.5
16,918	-		GFF6232	0.12	-1.8
17,130	+		GFF6232	0.16	-0.8
17,130	+		GFF6232	0.16	+0.8
17,131	-		GFF6232	0.16	-0.3
17,131	-		GFF6232	0.16	-1.5
17,895	+		GFF6232	0.30	-1.4
17,895	+		GFF6232	0.30	+0.3
17,896	-		GFF6232	0.30	+0.0
17,896	-		GFF6232	0.30	+0.8
17,901	+		GFF6232	0.30	-2.4
17,901	+		GFF6232	0.30	-1.1
17,901	+		GFF6232	0.30	-0.1
17,901	+		GFF6232	0.30	+0.0
17,902	-		GFF6232	0.30	-0.8
17,902	-		GFF6232	0.30	-0.6
17,902	-		GFF6232	0.30	-0.1
18,262	-		GFF6232	0.36	+0.2
18,262	-		GFF6232	0.36	-0.0
18,262	-		GFF6232	0.36	-0.2
18,262	-		GFF6232	0.36	+0.1
18,262	-		GFF6232	0.36	-1.0
18,924	+		GFF6232	0.49	-1.2
19,128	+		GFF6232	0.52	-0.5
19,497	+		GFF6232	0.59	-0.6
19,498	-		GFF6232	0.59	-0.5
19,707	+		GFF6232	0.63	-0.7
19,707	+		GFF6232	0.63	+0.7
19,708	-		GFF6232	0.63	-2.1
19,708	-		GFF6232	0.63	-0.5
19,710	+		GFF6232	0.63	+0.6
19,711	-		GFF6232	0.63	-0.6
19,711	-		GFF6232	0.63	+0.8
19,914	+		GFF6232	0.67	-0.2
19,915	-		GFF6232	0.67	-0.2
19,915	-		GFF6232	0.67	-1.4
20,266	-		GFF6232	0.73	+0.5
20,629	-		GFF6232	0.80	+0.1
20,629	-		GFF6232	0.80	+0.4
21,750	-				+1.4
21,899	+		GFF6233	0.10	+0.8
21,900	-		GFF6233	0.10	-0.0
22,121	+		GFF6233	0.23	-0.1
22,121	+		GFF6233	0.23	+0.2
22,122	-		GFF6233	0.23	-0.6
22,122	-		GFF6233	0.23	+0.2
22,454	+		GFF6233	0.43	-0.8
22,526	+		GFF6233	0.47	+1.8
22,526	+		GFF6233	0.47	-0.0
22,586	+		GFF6233	0.50	+0.4
22,587	-		GFF6233	0.50	-0.4
22,698	-		GFF6233	0.57	-1.0
22,721	+		GFF6233	0.58	-0.4
22,721	+		GFF6233	0.58	-1.2