Strain Fitness in Variovorax sp. SCN45 around GFF6220

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6219 and GFF6220 are separated by 153 nucleotides GFF6219 - hypothetical protein, at 127,859 to 132,379 GFF6219 GFF6220 - hypothetical protein, at 132,533 to 135,472 GFF6220 Position (kb) 132 133 134 135 136Strain fitness (log2 ratio) -2 -1 0 1at 131.572 kb on + strand, within GFF6219at 131.594 kb on + strand, within GFF6219at 131.594 kb on + strand, within GFF6219at 131.594 kb on + strand, within GFF6219at 131.595 kb on - strand, within GFF6219at 131.595 kb on - strand, within GFF6219at 131.595 kb on - strand, within GFF6219at 131.595 kb on - strand, within GFF6219at 131.595 kb on - strand, within GFF6219at 131.840 kb on + strand, within GFF6219at 131.840 kb on + strand, within GFF6219at 131.840 kb on + strand, within GFF6219at 131.840 kb on + strand, within GFF6219at 131.840 kb on + strand, within GFF6219at 131.841 kb on - strand, within GFF6219at 131.841 kb on - strand, within GFF6219at 131.841 kb on - strand, within GFF6219at 132.086 kb on + strandat 132.086 kb on + strandat 132.333 kb on - strandat 132.333 kb on - strandat 132.333 kb on - strandat 132.432 kb on + strandat 132.824 kb on + strandat 132.824 kb on + strandat 132.824 kb on + strandat 133.703 kb on - strand, within GFF6220at 133.898 kb on + strand, within GFF6220at 134.076 kb on - strand, within GFF6220at 134.110 kb on + strand, within GFF6220at 134.110 kb on + strand, within GFF6220at 134.111 kb on - strand, within GFF6220at 134.111 kb on - strand, within GFF6220at 134.111 kb on - strand, within GFF6220at 134.111 kb on - strand, within GFF6220at 134.111 kb on - strand, within GFF6220at 134.114 kb on + strand, within GFF6220at 134.115 kb on - strand, within GFF6220at 134.115 kb on - strand, within GFF6220at 134.274 kb on - strand, within GFF6220at 134.303 kb on + strand, within GFF6220at 134.303 kb on + strand, within GFF6220at 134.304 kb on - strand, within GFF6220at 134.391 kb on - strand, within GFF6220at 134.668 kb on + strand, within GFF6220at 134.679 kb on - strand, within GFF6220at 134.679 kb on - strand, within GFF6220at 134.690 kb on + strand, within GFF6220at 134.690 kb on + strand, within GFF6220at 134.690 kb on + strand, within GFF6220at 134.690 kb on + strand, within GFF6220at 134.690 kb on + strand, within GFF6220at 134.690 kb on + strand, within GFF6220at 134.691 kb on - strand, within GFF6220at 134.691 kb on - strand, within GFF6220at 134.691 kb on - strand, within GFF6220at 134.692 kb on + strand, within GFF6220at 134.692 kb on + strand, within GFF6220at 134.692 kb on + strand, within GFF6220at 134.692 kb on + strand, within GFF6220at 134.692 kb on + strand, within GFF6220at 134.693 kb on - strand, within GFF6220at 134.701 kb on + strand, within GFF6220at 134.701 kb on + strand, within GFF6220at 134.702 kb on - strand, within GFF6220at 134.705 kb on + strand, within GFF6220at 134.706 kb on - strand, within GFF6220at 134.706 kb on - strand, within GFF6220at 134.706 kb on - strand, within GFF6220at 134.706 kb on - strand, within GFF6220at 134.819 kb on + strand, within GFF6220at 134.820 kb on - strand, within GFF6220at 134.822 kb on - strand, within GFF6220at 134.849 kb on + strand, within GFF6220at 134.849 kb on + strand, within GFF6220at 134.849 kb on + strand, within GFF6220at 134.850 kb on - strand, within GFF6220at 134.850 kb on - strand, within GFF6220at 134.850 kb on - strand, within GFF6220at 134.856 kb on - strand, within GFF6220at 134.898 kb on + strand, within GFF6220at 134.898 kb on + strand, within GFF6220at 134.898 kb on + strand, within GFF6220at 135.188 kb on + strandat 135.204 kb on - strandat 135.363 kb on - strandat 135.363 kb on - strandat 135.363 kb on - strandat 135.371 kb on + strandat 135.419 kb on + strandat 135.419 kb on + strandat 135.563 kb on + strandat 135.564 kb on - strandat 135.565 kb on + strandat 135.565 kb on + strandat 135.566 kb on - strandat 135.566 kb on - strandat 135.566 kb on - strandat 135.566 kb on - strandat 135.566 kb on - strandat 135.723 kb on - strandat 135.724 kb on + strandat 135.724 kb on + strandat 135.724 kb on + strandat 135.724 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
remove
131,572 + GFF6219 0.82 +0.0
131,594 + GFF6219 0.83 -2.3
131,594 + GFF6219 0.83 -0.1
131,594 + GFF6219 0.83 +0.1
131,595 - GFF6219 0.83 +0.5
131,595 - GFF6219 0.83 +1.2
131,595 - GFF6219 0.83 -0.8
131,595 - GFF6219 0.83 -1.6
131,595 - GFF6219 0.83 -1.3
131,840 + GFF6219 0.88 -0.5
131,840 + GFF6219 0.88 -0.4
131,840 + GFF6219 0.88 -1.0
131,840 + GFF6219 0.88 +0.1
131,840 + GFF6219 0.88 -1.0
131,841 - GFF6219 0.88 -0.2
131,841 - GFF6219 0.88 -0.1
131,841 - GFF6219 0.88 -1.1
132,086 + -0.8
132,086 + -1.6
132,333 - -0.0
132,333 - -0.4
132,333 - +0.7
132,432 + +1.0
132,824 + -0.1
132,824 + -0.4
132,824 + -1.4
133,703 - GFF6220 0.40 +0.6
133,898 + GFF6220 0.46 +0.4
134,076 - GFF6220 0.52 -0.3
134,110 + GFF6220 0.54 +0.1
134,110 + GFF6220 0.54 -0.1
134,111 - GFF6220 0.54 +0.7
134,111 - GFF6220 0.54 -1.3
134,111 - GFF6220 0.54 -1.5
134,111 - GFF6220 0.54 +0.7
134,111 - GFF6220 0.54 -0.1
134,114 + GFF6220 0.54 +0.7
134,115 - GFF6220 0.54 -0.5
134,115 - GFF6220 0.54 +1.1
134,274 - GFF6220 0.59 -0.6
134,303 + GFF6220 0.60 +0.0
134,303 + GFF6220 0.60 -0.8
134,304 - GFF6220 0.60 +0.2
134,391 - GFF6220 0.63 +1.2
134,668 + GFF6220 0.73 -0.1
134,679 - GFF6220 0.73 -0.9
134,679 - GFF6220 0.73 -0.5
134,690 + GFF6220 0.73 +0.5
134,690 + GFF6220 0.73 +0.5
134,690 + GFF6220 0.73 +0.1
134,690 + GFF6220 0.73 +0.3
134,690 + GFF6220 0.73 -0.3
134,690 + GFF6220 0.73 -0.6
134,691 - GFF6220 0.73 -0.5
134,691 - GFF6220 0.73 -0.5
134,691 - GFF6220 0.73 +0.2
134,692 + GFF6220 0.73 +0.1
134,692 + GFF6220 0.73 -0.5
134,692 + GFF6220 0.73 -0.1
134,692 + GFF6220 0.73 -0.9
134,692 + GFF6220 0.73 -0.7
134,693 - GFF6220 0.73 -0.2
134,701 + GFF6220 0.74 +0.4
134,701 + GFF6220 0.74 +0.0
134,702 - GFF6220 0.74 +0.7
134,705 + GFF6220 0.74 +0.2
134,706 - GFF6220 0.74 -0.2
134,706 - GFF6220 0.74 -1.9
134,706 - GFF6220 0.74 -0.4
134,706 - GFF6220 0.74 +0.4
134,819 + GFF6220 0.78 -1.6
134,820 - GFF6220 0.78 +0.3
134,822 - GFF6220 0.78 +1.0
134,849 + GFF6220 0.79 -0.1
134,849 + GFF6220 0.79 -1.1
134,849 + GFF6220 0.79 -0.9
134,850 - GFF6220 0.79 -1.1
134,850 - GFF6220 0.79 -1.3
134,850 - GFF6220 0.79 -0.5
134,856 - GFF6220 0.79 +0.2
134,898 + GFF6220 0.80 -1.4
134,898 + GFF6220 0.80 +1.4
134,898 + GFF6220 0.80 -0.5
135,188 + +1.5
135,204 - -0.7
135,363 - -0.5
135,363 - -0.4
135,363 - -1.2
135,371 + -0.1
135,419 + +0.2
135,419 + -2.0
135,563 + -1.0
135,564 - -0.2
135,565 + -1.1
135,565 + -2.0
135,566 - -1.4
135,566 - -0.5
135,566 - -1.1
135,566 - -0.3
135,566 - -0.3
135,723 - +1.1
135,724 + -2.1
135,724 + +0.5
135,724 + -0.1
135,724 + +0.5

Or see this region's nucleotide sequence