Strain Fitness in Variovorax sp. SCN45 around GFF6219

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
126,920	+				+0.4
126,920	+				-1.2
126,920	+				-0.6
126,920	+				+0.4
126,920	+				+0.3
126,920	+				-1.2
126,920	+				-0.3
126,920	+				+0.0
126,920	+				+2.0
126,921	-				-1.4
126,921	-				-0.5
126,921	-				-1.1
126,921	-				+0.5
126,921	-				-0.2
126,921	-				-0.1
126,921	-				-0.3
126,921	-				-1.2
126,921	-				-0.4
126,921	-				+1.1
126,921	-				+0.6
126,921	-				-0.5
126,955	+				-0.1
126,955	+				+0.9
126,955	+				-0.4
126,955	+				+0.9
126,955	+				-0.2
126,955	+				-0.4
126,955	+				-1.5
126,956	-				-1.0
126,956	-				+1.9
126,956	-				+0.3
126,956	-				+0.1
126,956	-				+0.9
127,102	+				-0.1
127,102	+				+0.7
127,102	+				-1.0
127,102	+				+0.3
127,103	-				-0.3
127,103	-				-0.1
127,166	+				-0.4
127,166	+				-0.7
127,166	+				-0.3
127,166	+				+1.0
127,166	+				-1.6
127,167	-				-0.9
127,167	-				-0.9
127,167	-				-0.1
127,167	-				-0.2
127,412	+				-0.5
127,412	+				+0.2
127,412	+				+0.3
127,412	+				-0.3
127,412	+				+0.5
127,412	+				-1.1
127,412	+				+0.1
127,412	+				-0.5
127,413	-				-1.3
127,413	-				+0.1
127,413	-				-0.9
127,809	-				-0.2
127,904	+				-1.0
127,904	+				+0.1
127,904	+				-0.2
127,904	+				-1.6
127,904	+				-0.1
127,904	+				-0.9
127,904	+				-0.3
127,904	+				+0.4
127,905	-				-0.2
127,905	-				+0.9
127,998	+				-0.1
127,998	+				-0.1
127,998	+				-0.3
127,999	-				-0.7
127,999	-				-0.5
128,150	+				+0.1
128,150	+				-0.8
128,150	+				-0.2
128,150	+				+1.7
128,151	-				-0.7
128,151	-				-0.3
128,151	-				+0.7
128,151	-				-0.3
128,396	+		GFF6219	0.12	-0.4
128,396	+		GFF6219	0.12	+0.2
128,397	-		GFF6219	0.12	+0.5
128,397	-		GFF6219	0.12	-0.3
128,397	-		GFF6219	0.12	-0.9
128,397	-		GFF6219	0.12	-0.7
128,397	-		GFF6219	0.12	-2.3
128,397	-		GFF6219	0.12	-0.7
128,397	-		GFF6219	0.12	+0.5
128,397	-		GFF6219	0.12	-0.1
128,397	-		GFF6219	0.12	+1.4
128,618	-		GFF6219	0.17	-1.3
128,642	+		GFF6219	0.17	+0.4
128,643	-		GFF6219	0.17	-1.4
128,643	-		GFF6219	0.17	+3.5
128,643	-		GFF6219	0.17	-0.3
128,665	+		GFF6219	0.18	-0.3
128,888	+		GFF6219	0.23	-1.1
128,888	+		GFF6219	0.23	-0.2
128,889	-		GFF6219	0.23	-0.9
128,889	-		GFF6219	0.23	+0.9
128,889	-		GFF6219	0.23	+0.3
128,988	+		GFF6219	0.25	-0.3
128,988	+		GFF6219	0.25	-1.1
128,989	-		GFF6219	0.25	-0.5
129,134	+		GFF6219	0.28	-0.7
129,134	+		GFF6219	0.28	-0.4
129,134	+		GFF6219	0.28	+1.3
129,135	-		GFF6219	0.28	+0.5
129,135	-		GFF6219	0.28	-1.1
129,380	+		GFF6219	0.34	+0.2
129,380	+		GFF6219	0.34	-0.6
129,381	-		GFF6219	0.34	-0.2
129,381	-		GFF6219	0.34	-0.2
129,381	-		GFF6219	0.34	-0.6
129,381	-		GFF6219	0.34	-1.1
129,381	-		GFF6219	0.34	+0.5
129,381	-		GFF6219	0.34	+0.3
129,626	+		GFF6219	0.39	-0.4
129,627	-		GFF6219	0.39	-0.1
129,889	+		GFF6219	0.45	-1.5
129,889	+		GFF6219	0.45	-1.2
129,889	+		GFF6219	0.45	+0.1
129,890	-		GFF6219	0.45	-2.5
129,890	-		GFF6219	0.45	-0.1
129,890	-		GFF6219	0.45	-1.2
130,279	+		GFF6219	0.54	-1.1
130,365	-		GFF6219	0.55	-0.3
130,610	+		GFF6219	0.61	+0.5
130,610	+		GFF6219	0.61	-0.4
130,610	+		GFF6219	0.61	-0.2
130,610	+		GFF6219	0.61	+0.6
130,611	-		GFF6219	0.61	+0.1
130,611	-		GFF6219	0.61	+0.8
130,611	-		GFF6219	0.61	+0.6
130,611	-		GFF6219	0.61	+1.1
130,856	+		GFF6219	0.66	-0.0
130,857	-		GFF6219	0.66	+0.5
131,147	+		GFF6219	0.73	-0.5
131,147	+		GFF6219	0.73	-0.7
131,147	+		GFF6219	0.73	+0.2
131,147	+		GFF6219	0.73	-0.6
131,147	+		GFF6219	0.73	-0.6
131,148	-		GFF6219	0.73	-0.1
131,348	+		GFF6219	0.77	+0.3
131,348	+		GFF6219	0.77	-1.1
131,348	+		GFF6219	0.77	-0.0
131,349	-		GFF6219	0.77	+2.3
131,349	-		GFF6219	0.77	+0.6
131,349	-		GFF6219	0.77	-0.3
131,572	+		GFF6219	0.82	+0.0
131,594	+		GFF6219	0.83	-2.3
131,594	+		GFF6219	0.83	-0.1
131,594	+		GFF6219	0.83	+0.1
131,595	-		GFF6219	0.83	+0.5
131,595	-		GFF6219	0.83	+1.2
131,595	-		GFF6219	0.83	-0.8
131,595	-		GFF6219	0.83	-1.6
131,595	-		GFF6219	0.83	-1.3
131,840	+		GFF6219	0.88	-0.5
131,840	+		GFF6219	0.88	-0.4
131,840	+		GFF6219	0.88	-1.0
131,840	+		GFF6219	0.88	+0.1
131,840	+		GFF6219	0.88	-1.0
131,841	-		GFF6219	0.88	-0.2
131,841	-		GFF6219	0.88	-0.1
131,841	-		GFF6219	0.88	-1.1
132,086	+				-0.8
132,086	+				-1.6
132,333	-				-0.0
132,333	-				-0.4
132,333	-				+0.7
132,432	+				+1.0
132,824	+				-0.1
132,824	+				-0.4
132,824	+				-1.4