Strain Fitness in Variovorax sp. SCN45 around GFF6117

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
16,357	+		GFF6116	0.43	-0.1
16,357	+		GFF6116	0.43	-1.3
16,447	+		GFF6116	0.49	-0.4
16,447	+		GFF6116	0.49	-1.5
16,706	-		GFF6116	0.67	-0.2
16,949	-		GFF6116	0.84	-1.9
17,214	+				-1.7
17,215	-				-0.2
17,366	+		GFF6117	0.12	-1.1
17,618	+		GFF6117	0.34	-0.1
17,618	+		GFF6117	0.34	+0.3
17,619	-		GFF6117	0.34	-0.0
17,619	-		GFF6117	0.34	-0.6
17,796	-		GFF6117	0.49	-0.8
17,952	-		GFF6117	0.63	-1.0
18,207	-		GFF6117	0.85	-0.7
18,347	+				+0.1
18,909	+		GFF6118	0.44	-0.6
18,909	+		GFF6118	0.44	+0.1
18,931	-		GFF6118	0.47	-0.1
19,050	+		GFF6118	0.63	-0.5
19,050	+		GFF6118	0.63	+0.2
19,050	+		GFF6118	0.63	-0.8
19,051	-		GFF6118	0.64	-0.1
19,125	+		GFF6118	0.74	-2.3
19,152	+		GFF6118	0.77	-0.5
19,152	+		GFF6118	0.77	+0.2
19,153	-		GFF6118	0.78	-1.9
19,374	+				-0.8