Strain Fitness in Variovorax sp. SCN45 around GFF6061

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
121,811	+		GFF6060	0.25	+1.3
121,811	+		GFF6060	0.25	-0.7
121,812	-		GFF6060	0.25	-1.2
121,812	-		GFF6060	0.25	-0.2
122,689	+				+0.7
122,689	+				+0.0
122,690	-				-0.3
122,690	-				-0.1
122,713	+		GFF6061	0.12	-1.5
122,812	+		GFF6061	0.24	+0.0
122,813	-		GFF6061	0.24	-0.3
122,857	+		GFF6061	0.29	-1.2
122,857	+		GFF6061	0.29	-1.0
122,857	+		GFF6061	0.29	-0.6
122,920	+		GFF6061	0.36	+0.7
122,920	+		GFF6061	0.36	+0.0
122,920	+		GFF6061	0.36	-0.6
122,921	-		GFF6061	0.37	-0.4
122,921	-		GFF6061	0.37	-1.4
122,921	-		GFF6061	0.37	-0.7
123,417	+				-0.7
123,518	+				-0.5
123,543	+				-1.3
123,543	+				-0.8
123,543	+				+0.1
123,543	+				-1.7
123,544	-				-0.7
123,544	-				-0.0
123,544	-				-0.7
123,544	-				-0.3
123,544	-				-0.1
123,544	-				-0.3
123,544	-				+0.7
123,583	+				+1.9
123,598	+				-1.2
123,615	+				+0.4
123,616	-				+0.0
123,822	-		GFF6062	0.17	+1.6
124,319	+		GFF6062	0.47	-1.5
124,319	+		GFF6062	0.47	-0.3
124,319	+		GFF6062	0.47	-1.3
124,319	+		GFF6062	0.47	-0.7
124,320	-		GFF6062	0.47	-0.0
124,320	-		GFF6062	0.47	-0.8