Strain Fitness in Variovorax sp. SCN45 around GFF6006

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
63,440	-		GFF6005	0.39	-0.7
63,440	-		GFF6005	0.39	-0.6
63,455	-		GFF6005	0.40	+0.3
63,532	+		GFF6005	0.45	+0.9
63,532	+		GFF6005	0.45	+0.8
63,533	-		GFF6005	0.46	+1.1
63,533	-		GFF6005	0.46	-2.1
63,533	-		GFF6005	0.46	-0.0
63,538	+		GFF6005	0.46	-0.6
63,539	-		GFF6005	0.46	-0.4
63,601	+		GFF6005	0.50	-0.6
63,601	+		GFF6005	0.50	-0.1
63,601	+		GFF6005	0.50	-0.2
63,601	+		GFF6005	0.50	-0.8
63,601	+		GFF6005	0.50	-0.1
63,601	+		GFF6005	0.50	+0.5
63,601	+		GFF6005	0.50	-0.8
63,601	+		GFF6005	0.50	-0.1
63,602	-		GFF6005	0.50	-0.2
63,602	-		GFF6005	0.50	+0.3
63,602	-		GFF6005	0.50	+0.1
63,602	-		GFF6005	0.50	+0.0
63,602	-		GFF6005	0.50	+0.1
63,602	-		GFF6005	0.50	-0.0
63,766	+		GFF6005	0.61	-0.6
63,766	+		GFF6005	0.61	-1.2
64,255	+				-1.0
64,255	+				+1.1
64,255	+				+0.0
64,255	+				-0.1
64,256	-				+0.4
64,357	+				-1.8
64,453	+				+1.0
64,454	-				+1.3
64,586	-		GFF6006	0.23	-2.3
64,859	-		GFF6006	0.51	-0.6
64,951	+		GFF6006	0.60	-0.7
64,951	+		GFF6006	0.60	-1.0
64,951	+		GFF6006	0.60	+1.6
64,952	-		GFF6006	0.60	-1.0
65,429	+				-0.3
65,430	-				+0.4
65,577	+				-0.8
65,577	+				-0.6
65,577	+				+0.6
65,578	-				-0.5
65,578	-				-0.2
65,661	+		GFF6007	0.12	-0.1
65,776	-		GFF6007	0.17	+0.4
65,776	-		GFF6007	0.17	-1.1
65,776	-		GFF6007	0.17	-0.6
65,932	+		GFF6007	0.24	-1.2