Strain Fitness in Variovorax sp. SCN45 around GFF5671

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5668 and GFF5669 overlap by 4 nucleotidesGFF5669 and GFF5670 overlap by 4 nucleotidesGFF5670 and GFF5671 are separated by 10 nucleotidesGFF5671 and GFF5672 are separated by 74 nucleotidesGFF5672 and GFF5673 overlap by 4 nucleotides GFF5668 - Uncharacterized MFS-type transporter, at 43,891 to 45,402 GFF5668 GFF5669 - hypothetical protein, at 45,399 to 45,677 GFF5669 GFF5670 - Protein SlyX, at 45,674 to 45,865 GFF5670 GFF5671 - FIG01964566: Predicted membrane protein, hemolysin III homolog, at 45,876 to 46,562 GFF5671 GFF5672 - Dna binding response regulator PrrA (RegA), at 46,637 to 47,182 GFF5672 GFF5673 - Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-), at 47,179 to 48,495 GFF5673 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2at 45.265 kb on + strandat 45.265 kb on + strandat 45.265 kb on + strandat 45.265 kb on + strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.354 kb on + strandat 45.355 kb on - strandat 45.355 kb on - strandat 45.590 kb on - strand, within GFF5669at 45.701 kb on + strand, within GFF5670at 45.702 kb on - strand, within GFF5670at 45.740 kb on + strand, within GFF5670at 45.740 kb on + strand, within GFF5670at 45.740 kb on + strand, within GFF5670at 45.740 kb on + strand, within GFF5670at 45.740 kb on + strand, within GFF5670at 45.741 kb on - strand, within GFF5670at 45.741 kb on - strand, within GFF5670at 45.741 kb on - strand, within GFF5670at 45.741 kb on - strand, within GFF5670at 45.741 kb on - strand, within GFF5670at 45.849 kb on + strandat 45.849 kb on + strandat 45.849 kb on + strandat 45.850 kb on - strandat 45.850 kb on - strandat 45.860 kb on + strandat 45.860 kb on + strandat 45.860 kb on + strandat 45.861 kb on - strandat 45.861 kb on - strandat 45.861 kb on - strandat 45.861 kb on - strandat 45.959 kb on - strand, within GFF5671at 45.959 kb on - strand, within GFF5671at 45.959 kb on - strand, within GFF5671at 45.959 kb on - strand, within GFF5671at 45.959 kb on - strand, within GFF5671at 45.959 kb on - strand, within GFF5671at 45.984 kb on + strand, within GFF5671at 45.984 kb on + strand, within GFF5671at 45.984 kb on + strand, within GFF5671at 45.984 kb on + strand, within GFF5671at 45.984 kb on + strand, within GFF5671at 45.985 kb on - strand, within GFF5671at 45.985 kb on - strand, within GFF5671at 45.985 kb on - strand, within GFF5671at 45.985 kb on - strand, within GFF5671at 46.001 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.057 kb on + strand, within GFF5671at 46.057 kb on + strand, within GFF5671at 46.057 kb on + strand, within GFF5671at 46.057 kb on + strand, within GFF5671at 46.058 kb on - strand, within GFF5671at 46.058 kb on - strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.324 kb on + strand, within GFF5671at 46.324 kb on + strand, within GFF5671at 46.324 kb on + strand, within GFF5671at 46.325 kb on - strand, within GFF5671at 46.325 kb on - strand, within GFF5671at 46.325 kb on - strand, within GFF5671at 46.325 kb on - strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.343 kb on - strand, within GFF5671at 46.343 kb on - strand, within GFF5671at 46.343 kb on - strand, within GFF5671at 46.343 kb on - strand, within GFF5671at 46.417 kb on + strand, within GFF5671at 46.417 kb on + strand, within GFF5671at 46.418 kb on - strand, within GFF5671at 46.418 kb on - strand, within GFF5671at 46.630 kb on + strandat 46.630 kb on + strandat 46.630 kb on + strandat 46.631 kb on - strandat 46.631 kb on - strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.638 kb on + strandat 46.638 kb on + strandat 46.638 kb on + strandat 46.638 kb on + strandat 46.638 kb on + strandat 46.638 kb on + strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.675 kb on + strandat 46.675 kb on + strandat 46.676 kb on - strandat 46.676 kb on - strandat 46.747 kb on + strand, within GFF5672at 46.866 kb on + strand, within GFF5672at 46.866 kb on + strand, within GFF5672at 46.867 kb on - strand, within GFF5672at 46.867 kb on - strand, within GFF5672at 47.023 kb on - strand, within GFF5672at 47.088 kb on + strand, within GFF5672at 47.088 kb on + strand, within GFF5672at 47.088 kb on + strand, within GFF5672at 47.420 kb on + strand, within GFF5673at 47.421 kb on - strand, within GFF5673

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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45,265 + -0.9
45,265 + +0.5
45,265 + +0.4
45,265 + +0.0
45,266 - -0.9
45,266 - -1.1
45,266 - -0.2
45,266 - -0.6
45,266 - +1.0
45,266 - -0.8
45,354 + -0.2
45,355 - -0.3
45,355 - -0.7
45,590 - GFF5669 0.68 -0.3
45,701 + GFF5670 0.14 +0.2
45,702 - GFF5670 0.15 +0.6
45,740 + GFF5670 0.34 +0.3
45,740 + GFF5670 0.34 -1.1
45,740 + GFF5670 0.34 +0.5
45,740 + GFF5670 0.34 +0.1
45,740 + GFF5670 0.34 -0.4
45,741 - GFF5670 0.35 -0.2
45,741 - GFF5670 0.35 -0.9
45,741 - GFF5670 0.35 -0.7
45,741 - GFF5670 0.35 +0.6
45,741 - GFF5670 0.35 +0.1
45,849 + +0.2
45,849 + -0.9
45,849 + +1.4
45,850 - -1.6
45,850 - -1.8
45,860 + -0.1
45,860 + +1.3
45,860 + -0.3
45,861 - +0.1
45,861 - +0.7
45,861 - +0.0
45,861 - -1.0
45,959 - GFF5671 0.12 -0.0
45,959 - GFF5671 0.12 +2.3
45,959 - GFF5671 0.12 +0.4
45,959 - GFF5671 0.12 -1.4
45,959 - GFF5671 0.12 -1.6
45,959 - GFF5671 0.12 -1.0
45,984 + GFF5671 0.16 +0.0
45,984 + GFF5671 0.16 -1.0
45,984 + GFF5671 0.16 -0.9
45,984 + GFF5671 0.16 -1.6
45,984 + GFF5671 0.16 +0.7
45,985 - GFF5671 0.16 -0.0
45,985 - GFF5671 0.16 +0.6
45,985 - GFF5671 0.16 +0.1
45,985 - GFF5671 0.16 -0.7
46,001 + GFF5671 0.18 -0.7
46,003 + GFF5671 0.18 -0.2
46,003 + GFF5671 0.18 -0.4
46,003 + GFF5671 0.18 +0.2
46,003 + GFF5671 0.18 +0.2
46,003 + GFF5671 0.18 +0.7
46,003 + GFF5671 0.18 +0.3
46,003 + GFF5671 0.18 +0.3
46,003 + GFF5671 0.18 +0.8
46,003 + GFF5671 0.18 -0.5
46,003 + GFF5671 0.18 -0.9
46,003 + GFF5671 0.18 -0.8
46,003 + GFF5671 0.18 +0.7
46,004 - GFF5671 0.19 +0.2
46,004 - GFF5671 0.19 -1.3
46,004 - GFF5671 0.19 -0.0
46,004 - GFF5671 0.19 +0.3
46,004 - GFF5671 0.19 +0.1
46,004 - GFF5671 0.19 +0.3
46,004 - GFF5671 0.19 +0.2
46,004 - GFF5671 0.19 +1.0
46,004 - GFF5671 0.19 +0.0
46,057 + GFF5671 0.26 -0.2
46,057 + GFF5671 0.26 -0.3
46,057 + GFF5671 0.26 +1.1
46,057 + GFF5671 0.26 -0.5
46,058 - GFF5671 0.26 -0.4
46,058 - GFF5671 0.26 -1.3
46,102 + GFF5671 0.33 -0.0
46,102 + GFF5671 0.33 -0.5
46,102 + GFF5671 0.33 -0.1
46,102 + GFF5671 0.33 -0.6
46,102 + GFF5671 0.33 -0.9
46,102 + GFF5671 0.33 +0.0
46,102 + GFF5671 0.33 +0.1
46,103 - GFF5671 0.33 +0.4
46,103 - GFF5671 0.33 -0.1
46,103 - GFF5671 0.33 -0.5
46,103 - GFF5671 0.33 +0.1
46,103 - GFF5671 0.33 -0.3
46,103 - GFF5671 0.33 +0.0
46,103 - GFF5671 0.33 +1.1
46,103 - GFF5671 0.33 -1.0
46,103 - GFF5671 0.33 +1.0
46,240 + GFF5671 0.53 -0.3
46,240 + GFF5671 0.53 -0.1
46,240 + GFF5671 0.53 +0.3
46,240 + GFF5671 0.53 -1.1
46,240 + GFF5671 0.53 -0.2
46,240 + GFF5671 0.53 -0.2
46,240 + GFF5671 0.53 +0.3
46,240 + GFF5671 0.53 +1.3
46,240 + GFF5671 0.53 +1.1
46,240 + GFF5671 0.53 -1.1
46,240 + GFF5671 0.53 -0.5
46,241 - GFF5671 0.53 -0.2
46,241 - GFF5671 0.53 -0.3
46,241 - GFF5671 0.53 -0.2
46,241 - GFF5671 0.53 -0.2
46,241 - GFF5671 0.53 +0.0
46,241 - GFF5671 0.53 -1.1
46,241 - GFF5671 0.53 -1.1
46,241 - GFF5671 0.53 -0.6
46,241 - GFF5671 0.53 +2.3
46,241 - GFF5671 0.53 -0.3
46,261 + GFF5671 0.56 +0.5
46,261 + GFF5671 0.56 +0.3
46,261 + GFF5671 0.56 +2.2
46,261 + GFF5671 0.56 +0.4
46,261 + GFF5671 0.56 -0.7
46,262 - GFF5671 0.56 +0.5
46,262 - GFF5671 0.56 +0.6
46,262 - GFF5671 0.56 -0.2
46,262 - GFF5671 0.56 -0.3
46,262 - GFF5671 0.56 +0.2
46,262 - GFF5671 0.56 -1.1
46,262 - GFF5671 0.56 +0.6
46,262 - GFF5671 0.56 -0.5
46,262 - GFF5671 0.56 -0.8
46,324 + GFF5671 0.65 +0.0
46,324 + GFF5671 0.65 -0.8
46,324 + GFF5671 0.65 +0.4
46,325 - GFF5671 0.65 +0.7
46,325 - GFF5671 0.65 -0.3
46,325 - GFF5671 0.65 +2.2
46,325 - GFF5671 0.65 +0.7
46,342 + GFF5671 0.68 +0.4
46,342 + GFF5671 0.68 +0.1
46,342 + GFF5671 0.68 +0.0
46,342 + GFF5671 0.68 -0.7
46,342 + GFF5671 0.68 -0.7
46,343 - GFF5671 0.68 -0.3
46,343 - GFF5671 0.68 +0.0
46,343 - GFF5671 0.68 -0.4
46,343 - GFF5671 0.68 -0.1
46,417 + GFF5671 0.79 +0.2
46,417 + GFF5671 0.79 +0.2
46,418 - GFF5671 0.79 -0.3
46,418 - GFF5671 0.79 -0.2
46,630 + +0.5
46,630 + +0.2
46,630 + +0.0
46,631 - +2.7
46,631 - -0.6
46,635 + +1.7
46,635 + -1.3
46,635 + +0.5
46,635 + -0.1
46,635 + +0.9
46,635 + -0.6
46,635 + -0.2
46,636 - +0.1
46,636 - -0.1
46,636 - -1.3
46,636 - +0.1
46,636 - -0.0
46,636 - -1.6
46,636 - +1.0
46,638 + +0.8
46,638 + -1.7
46,638 + +2.1
46,638 + -0.3
46,638 + -0.5
46,638 + -0.1
46,639 - -0.4
46,639 - -0.8
46,639 - -0.1
46,639 - -0.1
46,639 - -1.0
46,639 - +0.0
46,639 - -0.3
46,639 - -1.0
46,639 - -0.2
46,639 - +0.4
46,639 - +0.4
46,639 - -0.9
46,675 + +0.1
46,675 + -0.2
46,676 - +1.7
46,676 - -0.7
46,747 + GFF5672 0.20 -0.6
46,866 + GFF5672 0.42 +0.2
46,866 + GFF5672 0.42 -0.5
46,867 - GFF5672 0.42 +0.4
46,867 - GFF5672 0.42 -0.4
47,023 - GFF5672 0.71 +0.0
47,088 + GFF5672 0.83 -1.3
47,088 + GFF5672 0.83 -0.8
47,088 + GFF5672 0.83 +0.0
47,420 + GFF5673 0.18 -0.0
47,421 - GFF5673 0.18 +0.2

Or see this region's nucleotide sequence