Strain Fitness in Variovorax sp. SCN45 around GFF5449

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
78,544	+				-0.2
78,544	+				-0.1
78,544	+				-0.1
78,544	+				-1.6
78,544	+				+0.7
78,544	+				-0.1
78,545	-				+0.4
78,545	-				-0.5
78,545	-				+0.0
78,545	-				+0.4
78,545	-				-0.7
78,545	-				+0.9
78,545	-				+0.8
78,545	-				-1.8
78,545	-				+0.2
78,545	-				+0.3
79,116	-				-0.0
79,138	+				-0.1
79,138	+				+0.9
79,138	+				-0.2
79,138	+				-0.7
79,138	+				+0.5
79,139	-				+1.9
79,139	-				-0.4
79,139	-				-0.5
79,139	-				-0.1
79,139	-				+1.9
79,139	-				+1.1
79,139	-				-0.5
79,139	-				+0.7
79,142	+				-0.4
79,142	+				+0.2
79,142	+				+1.1
79,142	+				-0.1
79,142	+				-1.0
79,142	+				+0.1
79,142	+				+0.3
79,142	+				+0.1
79,142	+				-0.3
79,142	+				+0.2
79,142	+				-0.2
79,142	+				+0.1
79,142	+				+0.2
79,142	+				-0.1
79,142	+				+0.1
79,142	+				+0.5
79,142	+				-0.3
79,143	-				+0.6
79,143	-				+0.5
79,143	-				-0.2
79,143	-				-0.3
79,143	-				-0.7
79,143	-				-0.1
79,143	-				-0.2
79,143	-				-0.3
79,143	-				-0.0
79,173	+				+0.2
79,174	-				-1.1
79,174	-				-1.4
79,397	+		GFF5449	0.23	+0.8
79,397	+		GFF5449	0.23	-0.2
79,397	+		GFF5449	0.23	-0.2
79,398	-		GFF5449	0.23	+1.2
79,398	-		GFF5449	0.23	+0.7
79,398	-		GFF5449	0.23	-0.2
79,398	-		GFF5449	0.23	+0.4
79,398	-		GFF5449	0.23	-0.5
79,398	-		GFF5449	0.23	+0.9
79,398	-		GFF5449	0.23	+0.2
79,398	-		GFF5449	0.23	-0.1
79,700	+		GFF5449	0.69	-0.1
79,700	+		GFF5449	0.69	-0.9
79,700	+		GFF5449	0.69	+0.6
79,700	+		GFF5449	0.69	+0.4
79,700	+		GFF5449	0.69	+0.1
79,700	+		GFF5449	0.69	+1.1
79,700	+		GFF5449	0.69	-0.5
79,700	+		GFF5449	0.69	-0.4
79,701	-		GFF5449	0.69	-0.6
79,743	+		GFF5449	0.75	+0.1
79,743	+		GFF5449	0.75	+0.4
79,744	-		GFF5449	0.75	-1.6
79,744	-		GFF5449	0.75	+0.1
79,744	-		GFF5449	0.75	-0.4
79,821	+		GFF5449	0.87	-0.1
79,822	-		GFF5449	0.87	+0.5
79,892	-				-0.2
79,892	-				-0.1
79,892	-				-0.2
79,945	+				-0.1
79,945	+				-0.2
79,945	+				-0.3
79,945	+				-1.0
79,945	+				+0.8
79,945	+				-0.4
79,945	+				+0.4
79,945	+				-1.8
79,945	+				+0.0
79,945	+				-0.1
79,945	+				-0.1
79,945	+				-0.1
79,945	+				-0.2
79,945	+				-0.5
79,946	-				-2.4
79,946	-				-0.2
79,946	-				-0.6
79,946	-				+0.6
79,946	-				+0.1
79,946	-				-0.4
79,946	-				+1.4
79,946	-				-0.5
79,946	-				-0.2
79,946	-				+0.3
79,946	-				+0.6
79,946	-				-0.0
79,946	-				+1.5
79,968	+				-0.6
79,968	+				-3.3
79,969	-				-1.4
79,993	+				-0.9
80,045	-				-0.6
80,092	+				-1.5
80,092	+				-0.0
80,092	+				-1.6
80,092	+				-0.3
80,093	-				+0.9
80,093	-				+0.3
80,093	-				+0.1
80,093	-				-0.8
80,093	-				-0.1
80,281	+				-0.9
80,281	+				-0.5
80,281	+				+0.4
80,281	+				-0.8
80,281	+				-1.0
80,281	+				-2.1
80,281	+				-1.4
80,281	+				-0.4
80,281	+				+0.5
80,281	+				+0.4
80,282	-				-0.9
80,282	-				-2.2
80,282	-				-0.3
80,282	-				+0.9
80,282	-				-0.1
80,282	-				-1.4
80,595	+		GFF5451	0.29	-0.4
80,643	+		GFF5451	0.33	-0.1
80,643	+		GFF5451	0.33	-0.5
80,643	+		GFF5451	0.33	+1.6
80,643	+		GFF5451	0.33	-0.8
80,643	+		GFF5451	0.33	-2.0
80,643	+		GFF5451	0.33	+0.4
80,644	-		GFF5451	0.33	-1.9
80,644	-		GFF5451	0.33	-1.3
80,644	-		GFF5451	0.33	+0.2
80,644	-		GFF5451	0.33	-0.5
80,644	-		GFF5451	0.33	-0.1
80,644	-		GFF5451	0.33	-0.1
80,644	-		GFF5451	0.33	+0.4
80,646	+		GFF5451	0.33	-0.4
80,646	+		GFF5451	0.33	+0.4
80,646	+		GFF5451	0.33	+0.6
80,646	+		GFF5451	0.33	+0.4
80,646	+		GFF5451	0.33	+1.1
80,646	+		GFF5451	0.33	-2.2
80,646	+		GFF5451	0.33	+0.7
80,647	-		GFF5451	0.33	+1.9
80,647	-		GFF5451	0.33	-0.3
80,647	-		GFF5451	0.33	+0.1
80,647	-		GFF5451	0.33	-1.2
80,647	-		GFF5451	0.33	+0.9
80,647	-		GFF5451	0.33	-1.0
80,647	-		GFF5451	0.33	+0.9
80,647	-		GFF5451	0.33	-0.6
80,658	+		GFF5451	0.34	-0.7
80,658	+		GFF5451	0.34	-0.5
80,658	+		GFF5451	0.34	-0.4
80,658	+		GFF5451	0.34	-0.8
80,658	+		GFF5451	0.34	+0.9
80,658	+		GFF5451	0.34	+0.9
80,658	+		GFF5451	0.34	+0.4
80,658	+		GFF5451	0.34	+1.1
80,659	-		GFF5451	0.34	+0.5
80,659	-		GFF5451	0.34	-0.1
80,659	-		GFF5451	0.34	+0.9
80,659	-		GFF5451	0.34	+0.9
80,659	-		GFF5451	0.34	+0.5
80,659	-		GFF5451	0.34	-0.2
80,659	-		GFF5451	0.34	-0.6
80,703	+		GFF5451	0.38	+0.7
80,703	+		GFF5451	0.38	+0.6
80,703	+		GFF5451	0.38	-0.4
80,704	-		GFF5451	0.38	-2.8
80,704	-		GFF5451	0.38	+0.4
80,704	-		GFF5451	0.38	-0.4
80,704	-		GFF5451	0.38	-0.7
80,704	-		GFF5451	0.38	-1.1
80,704	-		GFF5451	0.38	-0.6
80,742	+		GFF5451	0.42	-0.8
80,742	+		GFF5451	0.42	-0.4
80,742	+		GFF5451	0.42	+1.8
80,743	-		GFF5451	0.42	-1.4
80,887	-		GFF5451	0.55	-1.1