Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5286 and GFF5287 are separated by 1 nucleotides GFF5287 and GFF5288 are separated by 13 nucleotides GFF5288 and GFF5289 overlap by 4 nucleotides GFF5289 and GFF5290 are separated by 137 nucleotides
GFF5286 - Ferrichrome-iron receptor, at 154,842 to 157,322
GFF5286
GFF5287 - FIG00455092: hypothetical protein, at 157,324 to 158,043
GFF5287
GFF5288 - Uncharacterized protein PA4513, at 158,057 to 160,672
GFF5288
GFF5289 - hypothetical protein, at 160,669 to 161,424
GFF5289
GFF5290 - hypothetical protein, at 161,562 to 161,909
GFF5290
Position (kb) 158
159
160
161 Strain fitness (log2 ratio) -2
-1
0
1
2 at 157.092 kb on + strand at 157.092 kb on + strand at 157.092 kb on + strand at 157.092 kb on + strand at 157.092 kb on + strand at 157.093 kb on - strand at 157.093 kb on - strand at 157.132 kb on + strand at 157.132 kb on + strand at 157.132 kb on + strand at 157.132 kb on + strand at 157.143 kb on + strand at 157.144 kb on - strand at 157.170 kb on + strand at 157.171 kb on - strand at 157.171 kb on - strand at 157.185 kb on + strand at 157.186 kb on - strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.242 kb on + strand at 157.242 kb on + strand at 157.263 kb on + strand at 157.263 kb on + strand at 157.263 kb on + strand at 157.264 kb on - strand at 157.264 kb on - strand at 157.264 kb on - strand at 157.264 kb on - strand at 157.320 kb on + strand at 157.321 kb on - strand at 157.321 kb on - strand at 157.729 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.796 kb on - strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.862 kb on - strand, within GFF5287 at 157.862 kb on - strand, within GFF5287 at 157.862 kb on - strand, within GFF5287 at 157.918 kb on + strand, within GFF5287 at 157.918 kb on + strand, within GFF5287 at 157.918 kb on + strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 158.378 kb on + strand, within GFF5288 at 158.378 kb on + strand, within GFF5288 at 158.390 kb on + strand, within GFF5288 at 158.390 kb on + strand, within GFF5288 at 158.391 kb on - strand, within GFF5288 at 158.391 kb on - strand, within GFF5288 at 158.543 kb on + strand, within GFF5288 at 158.543 kb on + strand, within GFF5288 at 158.544 kb on - strand, within GFF5288 at 158.666 kb on + strand, within GFF5288 at 158.666 kb on + strand, within GFF5288 at 158.666 kb on + strand, within GFF5288 at 158.666 kb on + strand, within GFF5288 at 158.666 kb on + strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.693 kb on + strand, within GFF5288 at 158.693 kb on + strand, within GFF5288 at 158.694 kb on - strand, within GFF5288 at 158.694 kb on - strand, within GFF5288 at 158.694 kb on - strand, within GFF5288 at 159.059 kb on + strand, within GFF5288 at 159.060 kb on - strand, within GFF5288 at 159.060 kb on - strand, within GFF5288 at 159.080 kb on + strand, within GFF5288 at 159.080 kb on + strand, within GFF5288 at 159.080 kb on + strand, within GFF5288 at 159.080 kb on + strand, within GFF5288 at 159.080 kb on + strand, within GFF5288 at 159.080 kb on + strand, within GFF5288 at 159.081 kb on - strand, within GFF5288 at 159.081 kb on - strand, within GFF5288 at 159.161 kb on + strand, within GFF5288 at 159.161 kb on + strand, within GFF5288 at 159.161 kb on + strand, within GFF5288 at 159.161 kb on + strand, within GFF5288 at 159.161 kb on + strand, within GFF5288 at 159.161 kb on + strand, within GFF5288 at 159.162 kb on - strand, within GFF5288 at 159.162 kb on - strand, within GFF5288 at 159.162 kb on - strand, within GFF5288 at 159.545 kb on + strand, within GFF5288 at 159.546 kb on - strand, within GFF5288 at 159.816 kb on + strand, within GFF5288 at 160.089 kb on - strand, within GFF5288 at 160.295 kb on + strand, within GFF5288 at 160.295 kb on + strand, within GFF5288 at 160.295 kb on + strand, within GFF5288 at 160.296 kb on - strand, within GFF5288 at 160.481 kb on + strand at 160.481 kb on + strand at 160.481 kb on + strand at 160.481 kb on + strand at 160.481 kb on + strand at 160.481 kb on + strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.652 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.670 kb on + strand at 160.670 kb on + strand at 160.671 kb on - strand at 160.757 kb on + strand, within GFF5289 at 161.351 kb on + strand at 161.352 kb on - strand at 161.584 kb on + strand at 161.585 kb on - strand at 161.585 kb on - strand at 161.585 kb on - strand at 161.585 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 157,092 + -0.8 157,092 + +0.3 157,092 + +0.8 157,092 + +0.1 157,092 + +1.2 157,093 - +1.0 157,093 - -0.1 157,132 + +0.1 157,132 + -0.9 157,132 + -0.7 157,132 + -2.3 157,143 + -0.1 157,144 - -0.3 157,170 + +0.5 157,171 - +0.6 157,171 - -0.5 157,185 + -0.3 157,186 - +0.2 157,239 + -1.1 157,239 + +0.3 157,239 + -0.3 157,239 + +0.1 157,239 + -0.1 157,239 + -0.0 157,240 - +0.9 157,240 - +0.1 157,240 - -0.8 157,240 - -0.8 157,240 - +0.4 157,240 - +0.1 157,240 - -0.8 157,240 - -0.1 157,240 - -0.5 157,240 - -1.0 157,240 - -0.2 157,240 - +1.0 157,240 - +0.3 157,242 + +0.7 157,242 + -0.8 157,263 + -0.1 157,263 + -0.9 157,263 + +0.7 157,264 - -0.5 157,264 - -0.1 157,264 - -0.7 157,264 - +0.2 157,320 + -1.3 157,321 - -1.5 157,321 - -0.1 157,729 + GFF5287 0.56 -1.0 157,795 + GFF5287 0.65 -1.8 157,795 + GFF5287 0.65 +1.0 157,795 + GFF5287 0.65 -0.5 157,795 + GFF5287 0.65 +0.3 157,795 + GFF5287 0.65 -0.6 157,795 + GFF5287 0.65 -0.7 157,796 - GFF5287 0.66 -0.1 157,861 + GFF5287 0.75 +2.0 157,861 + GFF5287 0.75 -0.9 157,861 + GFF5287 0.75 +0.3 157,861 + GFF5287 0.75 -0.5 157,861 + GFF5287 0.75 -0.8 157,862 - GFF5287 0.75 -0.6 157,862 - GFF5287 0.75 +0.1 157,862 - GFF5287 0.75 -0.7 157,918 + GFF5287 0.82 +0.1 157,918 + GFF5287 0.82 +0.2 157,918 + GFF5287 0.82 -0.6 157,919 - GFF5287 0.83 +0.4 157,919 - GFF5287 0.83 -0.4 157,919 - GFF5287 0.83 -1.3 157,919 - GFF5287 0.83 +0.0 157,919 - GFF5287 0.83 +0.3 158,378 + GFF5288 0.12 -0.6 158,378 + GFF5288 0.12 +1.7 158,390 + GFF5288 0.13 -1.0 158,390 + GFF5288 0.13 -1.5 158,391 - GFF5288 0.13 +0.7 158,391 - GFF5288 0.13 +0.2 158,543 + GFF5288 0.19 +0.7 158,543 + GFF5288 0.19 -0.3 158,544 - GFF5288 0.19 +0.3 158,666 + GFF5288 0.23 +0.6 158,666 + GFF5288 0.23 -0.3 158,666 + GFF5288 0.23 -0.1 158,666 + GFF5288 0.23 -0.3 158,666 + GFF5288 0.23 -0.6 158,667 - GFF5288 0.23 +0.1 158,667 - GFF5288 0.23 -0.3 158,667 - GFF5288 0.23 +0.1 158,667 - GFF5288 0.23 +1.6 158,667 - GFF5288 0.23 +0.0 158,667 - GFF5288 0.23 +0.7 158,667 - GFF5288 0.23 +0.9 158,667 - GFF5288 0.23 -0.6 158,667 - GFF5288 0.23 +0.3 158,667 - GFF5288 0.23 -0.5 158,667 - GFF5288 0.23 -0.4 158,667 - GFF5288 0.23 -0.2 158,667 - GFF5288 0.23 -0.4 158,667 - GFF5288 0.23 -2.4 158,667 - GFF5288 0.23 -0.8 158,667 - GFF5288 0.23 -0.2 158,693 + GFF5288 0.24 -0.4 158,693 + GFF5288 0.24 +0.6 158,694 - GFF5288 0.24 -0.2 158,694 - GFF5288 0.24 +0.0 158,694 - GFF5288 0.24 +0.5 159,059 + GFF5288 0.38 +0.8 159,060 - GFF5288 0.38 -0.9 159,060 - GFF5288 0.38 +0.1 159,080 + GFF5288 0.39 -0.4 159,080 + GFF5288 0.39 +0.6 159,080 + GFF5288 0.39 +0.4 159,080 + GFF5288 0.39 +0.2 159,080 + GFF5288 0.39 -1.4 159,080 + GFF5288 0.39 +0.9 159,081 - GFF5288 0.39 -0.4 159,081 - GFF5288 0.39 +1.1 159,161 + GFF5288 0.42 +0.3 159,161 + GFF5288 0.42 -0.8 159,161 + GFF5288 0.42 +0.2 159,161 + GFF5288 0.42 -0.2 159,161 + GFF5288 0.42 -1.0 159,161 + GFF5288 0.42 -1.4 159,162 - GFF5288 0.42 -0.8 159,162 - GFF5288 0.42 -0.6 159,162 - GFF5288 0.42 +0.1 159,545 + GFF5288 0.57 -0.5 159,546 - GFF5288 0.57 +1.3 159,816 + GFF5288 0.67 +0.4 160,089 - GFF5288 0.78 +2.5 160,295 + GFF5288 0.86 +0.3 160,295 + GFF5288 0.86 -0.4 160,295 + GFF5288 0.86 +0.0 160,296 - GFF5288 0.86 -0.1 160,481 + +0.0 160,481 + -0.5 160,481 + -0.8 160,481 + -0.1 160,481 + -0.7 160,481 + -2.4 160,482 - -1.0 160,482 - +0.2 160,482 - +1.2 160,482 - -0.8 160,482 - +2.7 160,482 - -1.5 160,482 - +1.4 160,482 - -1.6 160,482 - +0.6 160,482 - -0.6 160,652 + -0.1 160,667 + +0.0 160,667 + -0.3 160,667 + +0.4 160,667 + +0.8 160,667 + -0.3 160,667 + +0.1 160,668 - -0.2 160,668 - -0.1 160,668 - -0.1 160,668 - +0.0 160,668 - +0.0 160,668 - -0.4 160,670 + +0.3 160,670 + -0.0 160,671 - -0.3 160,757 + GFF5289 0.12 -0.0 161,351 + -0.6 161,352 - +0.4 161,584 + +0.3 161,585 - +0.3 161,585 - -0.5 161,585 - +2.3 161,585 - -0.5
Or see this region's nucleotide sequence