Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5136 and GFF5137 are separated by 1 nucleotides GFF5137 and GFF5138 are separated by 106 nucleotides GFF5138 and GFF5139 are separated by 104 nucleotides
GFF5136 - Putative DNA helicase, at 238,497 to 243,143
GFF5136
GFF5137 - no description, at 243,145 to 243,342
GFF5137
GFF5138 - no description, at 243,449 to 243,592
GFF5138
GFF5139 - no description, at 243,697 to 244,518
GFF5139
Position (kb) 243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 242.254 kb on + strand, within GFF5136 at 242.551 kb on + strand, within GFF5136 at 242.552 kb on - strand, within GFF5136 at 242.555 kb on + strand, within GFF5136 at 242.555 kb on + strand, within GFF5136 at 242.555 kb on + strand, within GFF5136 at 242.555 kb on + strand, within GFF5136 at 242.555 kb on + strand, within GFF5136 at 242.555 kb on + strand, within GFF5136 at 242.555 kb on + strand, within GFF5136 at 242.555 kb on + strand, within GFF5136 at 242.556 kb on - strand, within GFF5136 at 242.556 kb on - strand, within GFF5136 at 242.556 kb on - strand, within GFF5136 at 242.556 kb on - strand, within GFF5136 at 242.634 kb on + strand, within GFF5136 at 242.635 kb on - strand, within GFF5136 at 242.653 kb on + strand, within GFF5136 at 242.654 kb on - strand, within GFF5136 at 242.654 kb on - strand, within GFF5136 at 242.716 kb on + strand at 242.717 kb on - strand at 242.717 kb on - strand at 243.039 kb on + strand at 243.040 kb on - strand at 243.040 kb on - strand at 243.040 kb on - strand at 243.106 kb on + strand at 243.106 kb on + strand at 243.106 kb on + strand at 243.107 kb on - strand at 243.107 kb on - strand at 243.322 kb on + strand, within GFF5137 at 243.322 kb on + strand, within GFF5137 at 243.323 kb on - strand at 243.323 kb on - strand at 243.323 kb on - strand at 243.323 kb on - strand at 243.404 kb on + strand at 243.404 kb on + strand at 243.405 kb on - strand at 243.405 kb on - strand at 243.406 kb on + strand at 243.407 kb on - strand at 243.413 kb on + strand at 243.414 kb on - strand at 243.419 kb on + strand at 243.420 kb on - strand at 243.420 kb on - strand at 243.420 kb on - strand at 243.420 kb on - strand at 243.420 kb on - strand at 243.426 kb on + strand at 243.427 kb on - strand at 243.427 kb on - strand at 243.427 kb on - strand at 243.455 kb on + strand at 243.456 kb on - strand at 243.610 kb on - strand at 243.610 kb on - strand at 243.731 kb on + strand at 243.731 kb on + strand at 243.731 kb on + strand at 243.731 kb on + strand at 243.731 kb on + strand at 243.732 kb on - strand at 244.258 kb on + strand, within GFF5139 at 244.259 kb on - strand, within GFF5139 at 244.259 kb on - strand, within GFF5139 at 244.267 kb on + strand, within GFF5139 at 244.267 kb on + strand, within GFF5139 at 244.267 kb on + strand, within GFF5139 at 244.267 kb on + strand, within GFF5139 at 244.270 kb on + strand, within GFF5139 at 244.270 kb on + strand, within GFF5139 at 244.270 kb on + strand, within GFF5139 at 244.270 kb on + strand, within GFF5139 at 244.270 kb on + strand, within GFF5139 at 244.271 kb on - strand, within GFF5139 at 244.271 kb on - strand, within GFF5139 at 244.271 kb on - strand, within GFF5139 at 244.271 kb on - strand, within GFF5139 at 244.271 kb on - strand, within GFF5139 at 244.271 kb on - strand, within GFF5139 at 244.271 kb on - strand, within GFF5139 at 244.295 kb on + strand, within GFF5139 at 244.296 kb on - strand, within GFF5139 at 244.296 kb on - strand, within GFF5139 at 244.296 kb on - strand, within GFF5139 at 244.296 kb on - strand, within GFF5139 at 244.296 kb on - strand, within GFF5139 at 244.324 kb on + strand, within GFF5139 at 244.325 kb on - strand, within GFF5139 at 244.325 kb on - strand, within GFF5139
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 242,254 + GFF5136 0.81 -0.6 242,551 + GFF5136 0.87 +1.0 242,552 - GFF5136 0.87 -1.6 242,555 + GFF5136 0.87 -0.5 242,555 + GFF5136 0.87 +0.2 242,555 + GFF5136 0.87 -1.1 242,555 + GFF5136 0.87 -0.9 242,555 + GFF5136 0.87 +0.6 242,555 + GFF5136 0.87 +0.6 242,555 + GFF5136 0.87 -0.7 242,555 + GFF5136 0.87 +0.1 242,556 - GFF5136 0.87 -1.0 242,556 - GFF5136 0.87 -0.6 242,556 - GFF5136 0.87 -0.5 242,556 - GFF5136 0.87 +1.9 242,634 + GFF5136 0.89 +0.7 242,635 - GFF5136 0.89 -0.6 242,653 + GFF5136 0.89 +0.2 242,654 - GFF5136 0.89 -0.5 242,654 - GFF5136 0.89 +0.8 242,716 + +0.2 242,717 - -0.8 242,717 - -0.2 243,039 + -0.6 243,040 - -0.2 243,040 - +0.9 243,040 - -0.2 243,106 + +1.2 243,106 + -1.3 243,106 + -1.0 243,107 - +0.1 243,107 - -1.6 243,322 + GFF5137 0.89 +0.0 243,322 + GFF5137 0.89 -0.1 243,323 - +1.4 243,323 - +0.1 243,323 - +1.0 243,323 - +0.2 243,404 + +1.1 243,404 + -3.0 243,405 - +0.5 243,405 - -0.2 243,406 + -1.7 243,407 - -0.4 243,413 + +0.9 243,414 - +1.2 243,419 + -0.5 243,420 - -0.8 243,420 - -0.5 243,420 - +0.3 243,420 - -0.5 243,420 - -0.9 243,426 + -0.2 243,427 - +0.3 243,427 - -1.1 243,427 - -0.5 243,455 + +0.3 243,456 - +0.5 243,610 - -0.0 243,610 - -1.7 243,731 + +0.9 243,731 + -0.0 243,731 + +1.2 243,731 + -0.5 243,731 + -0.2 243,732 - -1.4 244,258 + GFF5139 0.68 -1.9 244,259 - GFF5139 0.68 -0.0 244,259 - GFF5139 0.68 -0.1 244,267 + GFF5139 0.69 -0.0 244,267 + GFF5139 0.69 -0.1 244,267 + GFF5139 0.69 +0.6 244,267 + GFF5139 0.69 -0.5 244,270 + GFF5139 0.70 +0.3 244,270 + GFF5139 0.70 -2.8 244,270 + GFF5139 0.70 -0.5 244,270 + GFF5139 0.70 -0.6 244,270 + GFF5139 0.70 -0.2 244,271 - GFF5139 0.70 -0.1 244,271 - GFF5139 0.70 +0.1 244,271 - GFF5139 0.70 -0.4 244,271 - GFF5139 0.70 -2.1 244,271 - GFF5139 0.70 +0.1 244,271 - GFF5139 0.70 -0.4 244,271 - GFF5139 0.70 +0.1 244,295 + GFF5139 0.73 -0.2 244,296 - GFF5139 0.73 +0.4 244,296 - GFF5139 0.73 -0.8 244,296 - GFF5139 0.73 +0.3 244,296 - GFF5139 0.73 -0.7 244,296 - GFF5139 0.73 -0.8 244,324 + GFF5139 0.76 -0.2 244,325 - GFF5139 0.76 +0.0 244,325 - GFF5139 0.76 -1.9
Or see this region's nucleotide sequence