Strain Fitness in Variovorax sp. SCN45 around GFF5010

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
110,078	+				-1.0
110,091	+				-0.4
110,110	+				+2.9
110,110	+				+0.3
110,111	-				-0.6
110,215	+				+0.1
110,216	-				-0.7
110,238	+				-1.3
110,238	+				-0.9
110,238	+				-0.1
110,238	+				-0.1
110,238	+				+0.9
110,238	+				+1.6
110,239	-				-0.9
110,239	-				+0.4
110,239	-				-1.5
110,239	-				-0.2
110,239	-				-0.7
110,239	-				+0.3
110,239	-				-0.9
110,422	-		GFF5009	0.29	-0.7
110,445	+		GFF5009	0.32	-0.1
110,445	+		GFF5009	0.32	-1.1
110,446	-		GFF5009	0.32	+0.2
110,446	-		GFF5009	0.32	-0.1
110,446	-		GFF5009	0.32	-0.5
110,446	-		GFF5009	0.32	-0.5
110,446	-		GFF5009	0.32	-0.1
110,508	+		GFF5009	0.40	-0.7
110,508	+		GFF5009	0.40	+0.9
110,508	+		GFF5009	0.40	+1.5
110,508	+		GFF5009	0.40	+1.9
110,508	+		GFF5009	0.40	-1.8
110,508	+		GFF5009	0.40	+1.3
110,508	+		GFF5009	0.40	-0.5
110,508	+		GFF5009	0.40	-1.9
110,508	+		GFF5009	0.40	+0.6
110,508	+		GFF5009	0.40	+1.1
110,508	+		GFF5009	0.40	-0.4
110,508	+		GFF5009	0.40	-0.5
110,508	+		GFF5009	0.40	-0.1
110,508	+		GFF5009	0.40	-0.9
110,508	+		GFF5009	0.40	-0.4
110,509	-		GFF5009	0.40	-0.2
110,509	-		GFF5009	0.40	-1.0
110,509	-		GFF5009	0.40	-1.2
110,509	-		GFF5009	0.40	+0.2
110,509	-		GFF5009	0.40	-0.2
110,509	-		GFF5009	0.40	-1.1
110,509	-		GFF5009	0.40	-0.9
110,509	-		GFF5009	0.40	+0.2
110,595	+		GFF5009	0.51	-0.0
110,595	+		GFF5009	0.51	-0.9
110,595	+		GFF5009	0.51	-0.7
110,595	+		GFF5009	0.51	+0.9
110,595	+		GFF5009	0.51	+0.4
110,595	+		GFF5009	0.51	-0.8
110,595	+		GFF5009	0.51	-0.4
110,595	+		GFF5009	0.51	-0.9
110,595	+		GFF5009	0.51	-0.0
110,595	+		GFF5009	0.51	-1.0
110,595	+		GFF5009	0.51	+1.1
110,595	+		GFF5009	0.51	-0.2
110,595	+		GFF5009	0.51	+0.1
110,595	+		GFF5009	0.51	+0.0
110,595	+		GFF5009	0.51	+0.5
110,595	+		GFF5009	0.51	-0.4
110,595	+		GFF5009	0.51	-0.1
110,595	+		GFF5009	0.51	+0.3
110,595	+		GFF5009	0.51	+0.5
110,595	+		GFF5009	0.51	-1.6
110,595	+		GFF5009	0.51	-0.4
110,595	+		GFF5009	0.51	-0.2
110,595	+		GFF5009	0.51	+0.9
110,595	+		GFF5009	0.51	-0.9
110,595	+		GFF5009	0.51	-0.2
110,595	+		GFF5009	0.51	-0.4
110,595	+		GFF5009	0.51	-0.2
110,596	+		GFF5009	0.51	-2.7
110,596	-		GFF5009	0.51	-0.2
110,596	-		GFF5009	0.51	+0.2
110,596	-		GFF5009	0.51	-0.4
110,596	-		GFF5009	0.51	-1.1
110,596	-		GFF5009	0.51	+0.5
110,596	-		GFF5009	0.51	+0.0
110,596	-		GFF5009	0.51	+0.9
110,596	-		GFF5009	0.51	-0.4
110,596	-		GFF5009	0.51	-1.8
110,596	-		GFF5009	0.51	-1.2
110,596	-		GFF5009	0.51	-0.4
110,596	-		GFF5009	0.51	+0.5
110,596	-		GFF5009	0.51	-0.0
110,596	-		GFF5009	0.51	-0.6
110,596	-		GFF5009	0.51	+0.6
110,596	-		GFF5009	0.51	-0.6
110,596	-		GFF5009	0.51	-2.4
110,596	-		GFF5009	0.51	-1.4
110,596	-		GFF5009	0.51	-0.5
110,596	-		GFF5009	0.51	+2.5
110,596	-		GFF5009	0.51	-1.3
110,596	-		GFF5009	0.51	+0.4
110,607	+		GFF5009	0.53	-0.0
110,607	+		GFF5009	0.53	+0.5
110,607	+		GFF5009	0.53	-0.2
110,607	+		GFF5009	0.53	+0.1
110,607	+		GFF5009	0.53	+0.4
110,607	+		GFF5009	0.53	+1.1
110,607	+		GFF5009	0.53	-0.5
110,607	+		GFF5009	0.53	-0.4
110,607	+		GFF5009	0.53	-0.4
110,607	+		GFF5009	0.53	-0.1
110,607	+		GFF5009	0.53	-2.0
110,607	+		GFF5009	0.53	+0.3
110,607	+		GFF5009	0.53	+0.3
110,607	+		GFF5009	0.53	-0.9
110,607	+		GFF5009	0.53	+0.8
110,607	+		GFF5009	0.53	-0.1
110,607	+		GFF5009	0.53	+0.1
110,607	+		GFF5009	0.53	-0.2
110,607	+		GFF5009	0.53	-0.4
110,607	+		GFF5009	0.53	-0.8
110,607	+		GFF5009	0.53	-0.3
110,607	+		GFF5009	0.53	-0.4
110,607	+		GFF5009	0.53	-0.1
110,607	+		GFF5009	0.53	-0.7
110,607	+		GFF5009	0.53	-1.7
110,607	+		GFF5009	0.53	-0.4
110,608	+		GFF5009	0.53	+0.3
110,608	-		GFF5009	0.53	-1.3
110,608	-		GFF5009	0.53	-1.0
110,608	-		GFF5009	0.53	-1.5
110,608	-		GFF5009	0.53	+1.5
110,608	-		GFF5009	0.53	-0.8
110,608	-		GFF5009	0.53	-0.1
110,608	-		GFF5009	0.53	-1.9
110,608	-		GFF5009	0.53	-0.5
110,608	-		GFF5009	0.53	+0.0
110,608	-		GFF5009	0.53	-0.8
110,608	-		GFF5009	0.53	-0.4
110,608	-		GFF5009	0.53	+0.1
110,608	-		GFF5009	0.53	-0.9
110,608	-		GFF5009	0.53	+0.4
110,608	-		GFF5009	0.53	+0.6
110,608	-		GFF5009	0.53	-0.8
110,608	-		GFF5009	0.53	-0.7
110,608	-		GFF5009	0.53	+0.6
110,608	-		GFF5009	0.53	-0.6
110,608	-		GFF5009	0.53	-1.9
110,608	-		GFF5009	0.53	-1.1
110,608	-		GFF5009	0.53	-0.1
110,608	-		GFF5009	0.53	-0.8
110,608	-		GFF5009	0.53	-0.0
110,608	-		GFF5009	0.53	+0.7
110,608	-		GFF5009	0.53	-0.8
110,608	-		GFF5009	0.53	-0.9
110,635	-		GFF5009	0.56	-0.0
110,767	+		GFF5009	0.73	-1.7
110,768	-		GFF5009	0.73	+0.5
110,768	-		GFF5009	0.73	+0.4
110,781	+		GFF5009	0.75	-1.0
110,781	+		GFF5009	0.75	-0.1
110,781	+		GFF5009	0.75	-0.4
110,781	+		GFF5009	0.75	-0.4
110,781	+		GFF5009	0.75	-2.8
110,781	+		GFF5009	0.75	+1.0
110,781	+		GFF5009	0.75	-0.5
110,782	-		GFF5009	0.75	-0.3
110,782	-		GFF5009	0.75	-0.1
110,782	-		GFF5009	0.75	+0.1
110,782	-		GFF5009	0.75	+0.1
110,782	-		GFF5009	0.75	+0.6
110,782	-		GFF5009	0.75	-0.0
110,782	-		GFF5009	0.75	-0.4
110,782	-		GFF5009	0.75	+3.9
110,782	-		GFF5009	0.75	-1.1
110,782	-		GFF5009	0.75	+0.0
110,856	+		GFF5009	0.85	+0.5
110,856	+		GFF5009	0.85	+1.1
110,856	+		GFF5009	0.85	-0.5
110,856	+		GFF5009	0.85	+0.3
110,856	+		GFF5009	0.85	-0.3
110,856	+		GFF5009	0.85	+0.5
110,856	+		GFF5009	0.85	+0.1
110,856	+		GFF5009	0.85	-1.5
110,856	+		GFF5009	0.85	-0.9
110,856	+		GFF5009	0.85	-0.3
110,856	+		GFF5009	0.85	-0.9
110,856	+		GFF5009	0.85	-0.0
110,856	+		GFF5009	0.85	-0.1
110,856	+		GFF5009	0.85	-1.4
110,857	-		GFF5009	0.85	-1.2
110,857	-		GFF5009	0.85	-0.7
110,857	-		GFF5009	0.85	-0.4
110,857	-		GFF5009	0.85	+0.4
110,857	-		GFF5009	0.85	-0.2
110,857	-		GFF5009	0.85	-0.8
110,857	-		GFF5009	0.85	+0.5
110,857	-		GFF5009	0.85	+0.9
110,857	-		GFF5009	0.85	-0.7
110,857	-		GFF5009	0.85	+1.4
110,857	-		GFF5009	0.85	+0.2
110,857	-		GFF5009	0.85	-0.2
110,857	-		GFF5009	0.85	-0.7
110,857	-		GFF5009	0.85	-0.6
110,857	-		GFF5009	0.85	-0.3
110,857	-		GFF5009	0.85	-0.3
110,857	-		GFF5009	0.85	-0.2
110,857	-		GFF5009	0.85	-0.1
110,857	-		GFF5009	0.85	-0.3
110,857	-		GFF5009	0.85	+1.3
110,857	-		GFF5009	0.85	-0.6
110,857	-		GFF5009	0.85	-0.6
110,907	+				-0.6
110,907	+				+0.1
110,907	+				-0.2
110,907	+				-0.5
110,907	+				+0.3
110,907	+				-0.3
110,907	+				-1.4
110,907	+				+0.6
110,907	+				-0.2
110,907	+				-0.0
110,908	-				+0.6
110,908	-				-0.4
110,908	-				-0.7
110,995	+				+1.1
110,995	+				-0.6
110,995	+				-0.7
110,995	+				-1.6
110,995	+				+0.4
110,995	+				+0.3
110,995	+				-0.8
110,995	+				-1.4
110,995	+				+0.1
110,995	+				-1.1
110,995	+				-1.1
110,995	+				-0.6
110,995	+				-0.1
110,995	+				-0.9
110,995	+				-1.0
110,995	+				-0.6
110,996	-				+0.2
110,996	-				+0.2
110,996	-				-0.8
110,996	-				+0.4
110,996	-				-0.7
110,996	-				+0.2
110,996	-				+0.1
110,996	-				-0.2
110,996	-				-0.4
110,996	-				-0.5
110,996	-				+0.1
110,996	-				+0.1
110,996	-				-0.3
111,028	+				-0.2
111,028	+				-1.1
111,028	+				+0.7
111,028	+				-0.1
111,028	+				-0.1
111,028	+				+0.4
111,028	+				-1.1
111,028	+				+0.3
111,029	-				-1.4
111,029	-				+0.3
111,029	-				-0.4
111,029	-				+0.3
111,029	-				-1.3
111,029	-				-1.0
111,029	-				-0.9
111,029	-				-0.5
111,029	-				-0.9
111,495	+		GFF5010	0.26	+0.9
111,495	+		GFF5010	0.26	-0.5
111,495	+		GFF5010	0.26	-0.1
111,495	+		GFF5010	0.26	-0.9
111,495	+		GFF5010	0.26	-0.5
111,495	+		GFF5010	0.26	-0.5
111,496	-		GFF5010	0.26	+0.2
111,496	-		GFF5010	0.26	-0.7
111,538	-		GFF5010	0.29	-2.1
111,538	-		GFF5010	0.29	-0.7
111,654	+		GFF5010	0.36	-0.5
111,654	+		GFF5010	0.36	-0.6
111,655	-		GFF5010	0.36	-0.6
111,675	+		GFF5010	0.37	+0.6
111,675	+		GFF5010	0.37	+0.9
111,675	+		GFF5010	0.37	-0.7
111,676	-		GFF5010	0.37	-0.8
111,676	-		GFF5010	0.37	+0.3
111,676	-		GFF5010	0.37	-1.3
111,676	-		GFF5010	0.37	+1.1
111,676	-		GFF5010	0.37	-0.1
111,813	+		GFF5010	0.46	-0.9
111,814	-		GFF5010	0.46	+0.1
111,918	+		GFF5010	0.53	-0.8
111,918	+		GFF5010	0.53	-0.9
112,036	-		GFF5010	0.60	+0.4
112,036	-		GFF5010	0.60	+0.3
112,036	-		GFF5010	0.60	-0.5
112,182	+		GFF5010	0.69	-0.7
112,183	-		GFF5010	0.69	-0.5
112,183	-		GFF5010	0.69	-1.2
112,203	+		GFF5010	0.70	+0.5
112,203	+		GFF5010	0.70	-0.2
112,204	-		GFF5010	0.70	+0.2
112,204	-		GFF5010	0.70	-1.6
112,204	-		GFF5010	0.70	-0.0
112,317	+		GFF5010	0.77	-0.5
112,318	-		GFF5010	0.77	+1.0
112,318	-		GFF5010	0.77	-0.4
112,318	-		GFF5010	0.77	-0.2
112,318	-		GFF5010	0.77	-1.0
112,318	-		GFF5010	0.77	+0.3
112,332	+		GFF5010	0.78	+0.9
112,332	+		GFF5010	0.78	-0.1
112,332	+		GFF5010	0.78	-1.5
112,332	+		GFF5010	0.78	+0.1
112,332	+		GFF5010	0.78	-0.3
112,332	+		GFF5010	0.78	+0.1
112,332	+		GFF5010	0.78	-0.6
112,332	+		GFF5010	0.78	-0.6
112,332	+		GFF5010	0.78	+0.4
112,332	+		GFF5010	0.78	+0.5
112,332	+		GFF5010	0.78	-0.7
112,332	+		GFF5010	0.78	-1.0
112,332	+		GFF5010	0.78	+0.7
112,332	+		GFF5010	0.78	+0.9
112,332	+		GFF5010	0.78	+0.3
112,332	+		GFF5010	0.78	-0.4
112,332	+		GFF5010	0.78	-0.1
112,332	+		GFF5010	0.78	-0.1
112,333	-		GFF5010	0.78	+0.5
112,333	-		GFF5010	0.78	-2.1
112,333	-		GFF5010	0.78	+0.1
112,333	-		GFF5010	0.78	+0.1
112,333	-		GFF5010	0.78	+0.1
112,333	-		GFF5010	0.78	-2.0
112,333	-		GFF5010	0.78	+0.7
112,333	-		GFF5010	0.78	-0.2
112,333	-		GFF5010	0.78	-1.7
112,621	+				-0.7
112,621	+				+1.5
112,621	+				-0.8
112,622	-				-0.4
112,781	+				-0.4
112,781	+				-0.4
112,781	+				-0.8
112,781	+				-1.5
112,782	-				+0.5
112,782	-				-0.6
112,782	-				-0.1
112,782	-				-0.5
112,782	-				-1.0
112,865	+				-0.9
112,865	+				+0.2
112,865	+				-0.1
112,865	+				-0.6
112,865	+				-0.7
112,866	-				-0.2
112,866	-				+0.3
112,866	-				+0.6
112,932	-		GFF5011	0.13	+0.3
113,211	+		GFF5011	0.27	+0.1
113,212	-		GFF5011	0.27	-0.4
113,212	-		GFF5011	0.27	-0.8
113,212	-		GFF5011	0.27	-1.8
113,212	-		GFF5011	0.27	+0.1
113,489	+		GFF5011	0.41	-0.8
113,489	+		GFF5011	0.41	+0.7
113,489	+		GFF5011	0.41	-0.9
113,490	-		GFF5011	0.42	+0.2
113,490	-		GFF5011	0.42	-0.9
113,490	-		GFF5011	0.42	+0.7
113,537	+		GFF5011	0.44	+0.4
113,537	+		GFF5011	0.44	-0.0
113,538	-		GFF5011	0.44	-1.7