Strain Fitness in Variovorax sp. SCN45 around GFF4995

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
92,885	+		GFF4993	0.25	+0.2
92,886	-		GFF4993	0.25	-0.5
92,886	-		GFF4993	0.25	+0.3
92,886	-		GFF4993	0.25	-0.4
92,886	-		GFF4993	0.25	-0.0
92,886	-		GFF4993	0.25	-0.5
92,902	-		GFF4993	0.27	+1.9
92,975	+		GFF4993	0.36	+1.6
92,975	+		GFF4993	0.36	-0.3
92,975	+		GFF4993	0.36	-0.8
92,975	+		GFF4993	0.36	-1.1
92,975	+		GFF4993	0.36	-0.3
92,975	+		GFF4993	0.36	-1.4
92,975	+		GFF4993	0.36	-0.5
92,975	+		GFF4993	0.36	-0.3
92,975	+		GFF4993	0.36	+1.6
92,975	+		GFF4993	0.36	-0.6
92,975	+		GFF4993	0.36	-1.3
92,975	+		GFF4993	0.36	+0.3
92,975	+		GFF4993	0.36	-0.4
92,975	+		GFF4993	0.36	+0.8
92,976	-		GFF4993	0.36	-0.1
92,976	-		GFF4993	0.36	-1.4
92,976	-		GFF4993	0.36	-0.6
92,976	-		GFF4993	0.36	-0.4
92,976	-		GFF4993	0.36	+0.3
92,976	-		GFF4993	0.36	+1.0
92,976	-		GFF4993	0.36	-0.3
92,976	-		GFF4993	0.36	-0.3
92,976	-		GFF4993	0.36	-0.6
92,976	-		GFF4993	0.36	-0.4
92,976	-		GFF4993	0.36	+0.7
92,976	-		GFF4993	0.36	+0.3
92,976	-		GFF4993	0.36	+1.2
92,976	-		GFF4993	0.36	+0.7
92,976	-		GFF4993	0.36	+2.1
92,976	-		GFF4993	0.36	-0.5
92,976	-		GFF4993	0.36	-0.3
92,976	-		GFF4993	0.36	+0.1
92,976	-		GFF4993	0.36	-0.8
92,976	-		GFF4993	0.36	-1.3
92,984	+		GFF4993	0.37	+0.1
92,984	+		GFF4993	0.37	-0.4
92,984	+		GFF4993	0.37	+0.3
92,985	-		GFF4993	0.37	+1.4
92,985	-		GFF4993	0.37	+0.0
92,985	-		GFF4993	0.37	-0.3
92,985	-		GFF4993	0.37	-0.8
92,985	-		GFF4993	0.37	-0.6
92,985	-		GFF4993	0.37	+0.1
92,985	-		GFF4993	0.37	-0.2
93,086	+		GFF4993	0.49	-0.2
93,087	-		GFF4993	0.49	-0.6
93,087	-		GFF4993	0.49	+0.1
93,087	-		GFF4993	0.49	+0.1
93,098	+		GFF4993	0.50	+0.3
93,098	+		GFF4993	0.50	-0.8
93,098	+		GFF4993	0.50	+0.1
93,099	-		GFF4993	0.50	-0.2
93,099	-		GFF4993	0.50	+0.6
93,099	-		GFF4993	0.50	+1.0
93,099	-		GFF4993	0.50	-1.0
93,099	-		GFF4993	0.50	-0.4
93,099	-		GFF4993	0.50	-1.0
93,099	-		GFF4993	0.50	-0.1
93,099	-		GFF4993	0.50	-0.8
93,113	+		GFF4993	0.52	-1.4
93,113	+		GFF4993	0.52	-0.1
93,113	+		GFF4993	0.52	+1.0
93,114	-		GFF4993	0.52	-1.3
93,114	-		GFF4993	0.52	+0.3
93,114	-		GFF4993	0.52	+0.1
93,180	+		GFF4993	0.60	+1.5
93,290	+		GFF4993	0.73	+1.5
93,290	+		GFF4993	0.73	+0.1
93,291	-		GFF4993	0.73	+0.2
93,291	-		GFF4993	0.73	-0.5
93,291	-		GFF4993	0.73	+0.1
93,374	+		GFF4993	0.83	+0.4
93,374	+		GFF4993	0.83	-0.2
93,374	+		GFF4993	0.83	-0.4
93,375	-		GFF4993	0.83	+0.2
93,375	-		GFF4993	0.83	-0.3
93,375	-		GFF4993	0.83	-0.0
93,375	-		GFF4993	0.83	-0.1
93,375	-		GFF4993	0.83	-0.7
93,537	+				-0.3
93,547	+				-1.1
93,559	+				-0.7
93,559	+				+0.9
93,559	+				+0.1
93,559	+				-1.2
93,560	-				+1.1
93,560	-				-0.7
93,560	-				-1.9
93,560	-				+0.2
93,688	+		GFF4994	0.35	+0.5
93,688	+		GFF4994	0.35	-0.5
93,688	+		GFF4994	0.35	-0.1
93,688	+		GFF4994	0.35	-1.4
93,688	+		GFF4994	0.35	-2.3
93,688	+		GFF4994	0.35	-0.4
93,688	+		GFF4994	0.35	-1.2
93,688	+		GFF4994	0.35	+0.3
93,688	+		GFF4994	0.35	-0.2
93,689	-		GFF4994	0.35	-0.7
93,689	-		GFF4994	0.35	-1.4
93,689	-		GFF4994	0.35	-1.1
93,689	-		GFF4994	0.35	+0.9
93,689	-		GFF4994	0.35	-0.8
93,820	-		GFF4994	0.86	-1.4
93,823	+		GFF4994	0.87	-0.2
93,823	+		GFF4994	0.87	-0.1
93,823	+		GFF4994	0.87	+0.0
93,823	+		GFF4994	0.87	-0.3
93,823	+		GFF4994	0.87	+0.1
93,823	+		GFF4994	0.87	-0.5
93,823	+		GFF4994	0.87	+0.3
93,823	+		GFF4994	0.87	-0.9
93,823	+		GFF4994	0.87	+0.1
93,823	+		GFF4994	0.87	+0.5
93,823	+		GFF4994	0.87	+0.3
93,823	+		GFF4994	0.87	-1.3
93,823	+		GFF4994	0.87	-1.3
93,823	+		GFF4994	0.87	-0.3
93,823	+		GFF4994	0.87	+0.3
93,823	+		GFF4994	0.87	-0.6
93,823	+		GFF4994	0.87	+0.7
93,823	+		GFF4994	0.87	-0.1
93,823	+		GFF4994	0.87	+0.6
93,823	+		GFF4994	0.87	-0.5
93,824	-		GFF4994	0.88	-0.1
93,824	-		GFF4994	0.88	-0.0
93,824	-		GFF4994	0.88	-0.8
93,824	-		GFF4994	0.88	-1.0
93,824	-		GFF4994	0.88	-0.3
93,824	-		GFF4994	0.88	-0.0
93,824	-		GFF4994	0.88	-1.6
93,824	-		GFF4994	0.88	-0.4
93,824	-		GFF4994	0.88	+0.2
94,051	+		GFF4995	0.20	-0.3
94,051	+		GFF4995	0.20	-2.7
94,051	+		GFF4995	0.20	-0.7
94,051	+		GFF4995	0.20	-0.2
94,051	+		GFF4995	0.20	+0.5
94,051	+		GFF4995	0.20	+1.0
94,051	+		GFF4995	0.20	-0.5
94,051	+		GFF4995	0.20	+2.0
94,051	+		GFF4995	0.20	+1.0
94,051	+		GFF4995	0.20	-0.4
94,051	+		GFF4995	0.20	+3.9
94,051	+		GFF4995	0.20	-0.6
94,051	+		GFF4995	0.20	-1.3
94,051	+		GFF4995	0.20	+0.6
94,051	+		GFF4995	0.20	-0.4
94,052	-		GFF4995	0.20	-0.4
94,052	-		GFF4995	0.20	-1.9
94,052	-		GFF4995	0.20	-0.2
94,052	-		GFF4995	0.20	+0.4
94,052	-		GFF4995	0.20	+1.9
94,052	-		GFF4995	0.20	-0.6
94,052	-		GFF4995	0.20	+0.3
94,052	-		GFF4995	0.20	-0.3
94,052	-		GFF4995	0.20	-0.4
94,052	-		GFF4995	0.20	+0.1
94,072	+		GFF4995	0.22	-0.1
94,072	+		GFF4995	0.22	+0.1
94,073	-		GFF4995	0.23	-0.5
94,073	-		GFF4995	0.23	-0.7
94,146	+		GFF4995	0.30	+0.5
94,146	+		GFF4995	0.30	+0.5
94,147	-		GFF4995	0.31	+0.3
94,147	-		GFF4995	0.31	+0.3
94,147	-		GFF4995	0.31	-0.5
94,237	+		GFF4995	0.40	+0.2
94,237	+		GFF4995	0.40	+1.1
94,237	+		GFF4995	0.40	-0.4
94,237	+		GFF4995	0.40	+0.8
94,237	+		GFF4995	0.40	-0.2
94,237	+		GFF4995	0.40	-0.1
94,237	+		GFF4995	0.40	-0.9
94,237	+		GFF4995	0.40	-0.3
94,237	+		GFF4995	0.40	-2.1
94,237	+		GFF4995	0.40	-1.2
94,237	+		GFF4995	0.40	+2.6
94,237	+		GFF4995	0.40	-1.1
94,237	+		GFF4995	0.40	-0.4
94,237	+		GFF4995	0.40	+0.4
94,237	+		GFF4995	0.40	+0.1
94,237	+		GFF4995	0.40	-1.5
94,237	+		GFF4995	0.40	-0.8
94,237	+		GFF4995	0.40	-1.3
94,237	+		GFF4995	0.40	-1.3
94,238	-		GFF4995	0.41	+1.6
94,238	-		GFF4995	0.41	-0.5
94,238	-		GFF4995	0.41	+0.1
94,238	-		GFF4995	0.41	+1.0
94,238	-		GFF4995	0.41	-1.1
94,238	-		GFF4995	0.41	-0.4
94,238	-		GFF4995	0.41	-0.8
94,238	-		GFF4995	0.41	+0.2
94,238	-		GFF4995	0.41	-1.0
94,238	-		GFF4995	0.41	-1.1
94,238	-		GFF4995	0.41	-1.5
94,238	-		GFF4995	0.41	-0.2
94,238	-		GFF4995	0.41	-1.1
94,238	-		GFF4995	0.41	+0.6
94,238	-		GFF4995	0.41	+0.9
94,238	-		GFF4995	0.41	+0.1
94,238	-		GFF4995	0.41	-1.7
94,238	-		GFF4995	0.41	+0.3
94,238	-		GFF4995	0.41	-0.2
94,238	-		GFF4995	0.41	-0.4
94,238	-		GFF4995	0.41	+0.6
94,238	-		GFF4995	0.41	-0.3
94,238	-		GFF4995	0.41	+0.8
94,238	-		GFF4995	0.41	-1.2
94,238	-		GFF4995	0.41	+0.1
94,238	-		GFF4995	0.41	-0.5
94,238	-		GFF4995	0.41	-0.4
94,411	+		GFF4995	0.59	-0.7
94,411	+		GFF4995	0.59	-0.1
94,412	-		GFF4995	0.60	-0.6
94,412	-		GFF4995	0.60	+0.6
94,412	-		GFF4995	0.60	+1.4
94,432	+		GFF4995	0.62	+0.1
94,432	+		GFF4995	0.62	-0.0
94,432	+		GFF4995	0.62	-0.1
94,433	-		GFF4995	0.62	-1.5
94,433	-		GFF4995	0.62	-0.6
94,433	-		GFF4995	0.62	+1.3
94,433	-		GFF4995	0.62	-1.2
94,456	+		GFF4995	0.64	+2.4
94,456	+		GFF4995	0.64	-1.0
94,456	+		GFF4995	0.64	+0.5
94,456	+		GFF4995	0.64	-1.0
94,456	+		GFF4995	0.64	+0.9
94,456	+		GFF4995	0.64	+1.5
94,456	+		GFF4995	0.64	+0.1
94,456	+		GFF4995	0.64	-0.1
94,456	+		GFF4995	0.64	+0.3
94,456	+		GFF4995	0.64	-0.4
94,456	+		GFF4995	0.64	-1.1
94,456	+		GFF4995	0.64	-1.3
94,457	-		GFF4995	0.64	+0.4
94,457	-		GFF4995	0.64	-0.8
94,457	-		GFF4995	0.64	-1.6
94,457	-		GFF4995	0.64	+0.1
94,457	-		GFF4995	0.64	-0.6
94,457	-		GFF4995	0.64	-1.0
94,457	-		GFF4995	0.64	-1.1
94,457	-		GFF4995	0.64	+0.3
94,520	-		GFF4995	0.71	-0.7
94,520	-		GFF4995	0.71	-0.4
94,520	-		GFF4995	0.71	+0.1
94,520	-		GFF4995	0.71	+0.3
94,567	+		GFF4995	0.77	+0.2
94,567	+		GFF4995	0.77	+0.5
94,567	+		GFF4995	0.77	-0.5
94,567	+		GFF4995	0.77	-0.9
94,567	+		GFF4995	0.77	-0.6
94,567	+		GFF4995	0.77	-0.9
94,567	+		GFF4995	0.77	-0.4
94,567	+		GFF4995	0.77	-0.4
94,568	-		GFF4995	0.77	-0.5
94,568	-		GFF4995	0.77	-0.7
94,568	-		GFF4995	0.77	-0.8
94,568	-		GFF4995	0.77	-1.0
94,568	-		GFF4995	0.77	-0.0
94,568	-		GFF4995	0.77	-0.1
94,568	-		GFF4995	0.77	-1.1
94,674	+		GFF4995	0.88	-0.1
94,674	+		GFF4995	0.88	-0.8
94,674	+		GFF4995	0.88	-0.9
94,674	+		GFF4995	0.88	-0.3
94,675	-		GFF4995	0.88	+0.5
94,678	+		GFF4995	0.89	-1.1
94,678	+		GFF4995	0.89	-0.4
94,678	+		GFF4995	0.89	-1.0
94,678	+		GFF4995	0.89	-0.5
94,678	+		GFF4995	0.89	+0.4
94,678	+		GFF4995	0.89	+0.3
94,678	+		GFF4995	0.89	-0.4
94,678	+		GFF4995	0.89	-1.2
94,678	+		GFF4995	0.89	-0.8
94,679	-		GFF4995	0.89	-1.0
94,679	-		GFF4995	0.89	+0.5
94,679	-		GFF4995	0.89	-0.1
94,679	-		GFF4995	0.89	+0.1
94,841	+				-0.0
94,841	+				+1.6
94,975	+		GFF4996	0.54	-0.7
94,975	+		GFF4996	0.54	+0.2
94,975	+		GFF4996	0.54	-0.4
94,975	+		GFF4996	0.54	-0.3
94,975	+		GFF4996	0.54	+1.6
94,975	+		GFF4996	0.54	-0.6
94,975	+		GFF4996	0.54	+1.1
94,976	-		GFF4996	0.54	+1.0
94,976	-		GFF4996	0.54	-0.5
94,976	-		GFF4996	0.54	-0.4
94,976	-		GFF4996	0.54	-0.5
94,976	-		GFF4996	0.54	-0.7
94,976	-		GFF4996	0.54	-0.5
94,976	-		GFF4996	0.54	-1.4
94,976	-		GFF4996	0.54	+0.6
95,069	+				+0.2
95,069	+				+0.4
95,069	+				+0.9
95,069	+				-0.8
95,069	+				+0.2
95,069	+				+1.2
95,069	+				-0.0
95,069	+				-0.6
95,070	-				-0.1
95,070	-				+0.7
95,070	-				+0.4
95,070	-				+1.0
95,070	-				+0.3
95,070	-				-0.4
95,070	-				-0.2
95,113	+				+0.2
95,113	+				+0.7
95,113	+				-0.4
95,113	+				-0.1
95,113	+				-0.2
95,114	-				-0.4
95,114	-				-0.6
95,114	-				-0.5
95,114	-				-0.2
95,114	-				+0.6
95,114	-				-0.8
95,114	-				+0.3
95,114	-				-0.5
95,198	+				+0.3
95,198	+				+0.5
95,198	+				-0.2
95,198	+				+0.1
95,198	+				-1.4
95,198	+				-0.1
95,198	+				-0.1
95,198	+				-0.4
95,198	+				+0.1
95,198	+				+1.6
95,199	-				-0.4
95,199	-				-1.1
95,199	-				-0.9
95,199	-				-0.7
95,199	-				+0.4
95,199	-				+0.2
95,199	-				-0.7
95,248	+				+0.3
95,248	+				+0.3
95,249	-				+1.1
95,249	-				+0.5
95,249	-				+0.1
95,284	+		GFF4997	0.12	+0.4
95,310	+		GFF4997	0.13	-0.2
95,310	+		GFF4997	0.13	+1.1
95,310	+		GFF4997	0.13	-0.5
95,310	+		GFF4997	0.13	-0.2
95,310	+		GFF4997	0.13	+0.3
95,310	+		GFF4997	0.13	-2.1
95,310	+		GFF4997	0.13	-1.7
95,310	+		GFF4997	0.13	+1.3
95,310	+		GFF4997	0.13	+0.2
95,311	-		GFF4997	0.13	+0.3
95,311	-		GFF4997	0.13	+0.1
95,311	-		GFF4997	0.13	+0.2
95,350	+		GFF4997	0.16	-0.8
95,350	+		GFF4997	0.16	-0.2
95,350	+		GFF4997	0.16	+0.0
95,350	+		GFF4997	0.16	-1.3
95,350	+		GFF4997	0.16	+0.1
95,350	+		GFF4997	0.16	-0.2
95,350	+		GFF4997	0.16	+0.2
95,350	+		GFF4997	0.16	-0.1
95,350	+		GFF4997	0.16	-0.1
95,350	+		GFF4997	0.16	-0.7
95,350	+		GFF4997	0.16	+0.1
95,350	+		GFF4997	0.16	+0.2
95,350	+		GFF4997	0.16	+0.1
95,350	+		GFF4997	0.16	-0.3
95,350	+		GFF4997	0.16	-0.9
95,350	+		GFF4997	0.16	-0.4
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