Strain Fitness in Variovorax sp. SCN45 around GFF4799

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4798 and GFF4799 are separated by 82 nucleotidesGFF4799 and GFF4800 are separated by 188 nucleotides GFF4798 - tRNA dimethylallyltransferase (EC 2.5.1.75), at 167,853 to 168,890 GFF4798 GFF4799 - hypothetical protein, at 168,973 to 169,947 GFF4799 GFF4800 - DNA mismatch repair protein MutL, at 170,136 to 172,061 GFF4800 Position (kb) 168 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 168.502 kb on + strand, within GFF4798at 168.503 kb on - strand, within GFF4798at 168.724 kb on + strand, within GFF4798at 168.799 kb on + strandat 168.799 kb on + strandat 168.800 kb on - strandat 168.800 kb on - strandat 168.800 kb on - strandat 168.800 kb on - strandat 168.904 kb on + strandat 168.979 kb on - strandat 169.136 kb on + strand, within GFF4799at 169.137 kb on - strand, within GFF4799at 169.189 kb on + strand, within GFF4799at 169.189 kb on + strand, within GFF4799at 169.189 kb on + strand, within GFF4799at 169.189 kb on + strand, within GFF4799at 169.189 kb on + strand, within GFF4799at 169.220 kb on + strand, within GFF4799at 169.220 kb on + strand, within GFF4799at 169.221 kb on - strand, within GFF4799at 169.221 kb on - strand, within GFF4799at 169.221 kb on - strand, within GFF4799at 169.221 kb on - strand, within GFF4799at 169.484 kb on + strand, within GFF4799at 169.484 kb on + strand, within GFF4799at 169.484 kb on + strand, within GFF4799at 169.484 kb on + strand, within GFF4799at 169.484 kb on + strand, within GFF4799at 169.484 kb on + strand, within GFF4799at 169.484 kb on + strand, within GFF4799at 169.484 kb on + strand, within GFF4799at 169.484 kb on + strand, within GFF4799at 169.484 kb on + strand, within GFF4799at 169.484 kb on + strand, within GFF4799at 169.484 kb on + strand, within GFF4799at 169.484 kb on + strand, within GFF4799at 169.485 kb on - strand, within GFF4799at 169.485 kb on - strand, within GFF4799at 169.485 kb on - strand, within GFF4799at 169.485 kb on - strand, within GFF4799at 169.667 kb on + strand, within GFF4799at 169.667 kb on + strand, within GFF4799at 169.667 kb on + strand, within GFF4799at 169.667 kb on + strand, within GFF4799at 169.668 kb on - strand, within GFF4799at 169.668 kb on - strand, within GFF4799at 169.668 kb on - strand, within GFF4799at 169.685 kb on + strand, within GFF4799at 169.685 kb on + strand, within GFF4799at 169.685 kb on + strand, within GFF4799at 169.685 kb on + strand, within GFF4799at 169.686 kb on - strand, within GFF4799at 169.686 kb on - strand, within GFF4799at 169.686 kb on - strand, within GFF4799at 169.686 kb on - strand, within GFF4799at 169.686 kb on - strand, within GFF4799at 169.686 kb on - strand, within GFF4799at 169.741 kb on + strand, within GFF4799at 169.741 kb on + strand, within GFF4799at 169.741 kb on + strand, within GFF4799at 169.742 kb on - strand, within GFF4799at 169.742 kb on - strand, within GFF4799at 169.974 kb on + strandat 170.023 kb on + strandat 170.062 kb on + strandat 170.062 kb on + strandat 170.062 kb on + strandat 170.062 kb on + strandat 170.062 kb on + strandat 170.062 kb on + strandat 170.062 kb on + strandat 170.062 kb on + strandat 170.062 kb on + strandat 170.062 kb on + strandat 170.063 kb on - strandat 170.063 kb on - strandat 170.063 kb on - strandat 170.063 kb on - strandat 170.063 kb on - strandat 170.063 kb on - strandat 170.063 kb on - strandat 170.063 kb on - strandat 170.063 kb on - strandat 170.063 kb on - strandat 170.063 kb on - strandat 170.063 kb on - strandat 170.063 kb on - strandat 170.068 kb on - strandat 170.118 kb on + strandat 170.118 kb on + strandat 170.118 kb on + strandat 170.118 kb on + strandat 170.118 kb on + strandat 170.118 kb on + strandat 170.119 kb on - strandat 170.119 kb on - strandat 170.119 kb on - strandat 170.244 kb on + strandat 170.244 kb on + strandat 170.245 kb on - strandat 170.543 kb on + strand, within GFF4800at 170.544 kb on - strand, within GFF4800at 170.608 kb on + strand, within GFF4800at 170.608 kb on + strand, within GFF4800at 170.609 kb on - strand, within GFF4800at 170.609 kb on - strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.677 kb on + strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800at 170.678 kb on - strand, within GFF4800

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
remove
168,502 + GFF4798 0.63 +1.0
168,503 - GFF4798 0.63 -0.5
168,724 + GFF4798 0.84 +0.4
168,799 + -0.4
168,799 + -0.4
168,800 - +1.8
168,800 - +0.1
168,800 - -1.8
168,800 - +0.2
168,904 + +0.0
168,979 - +0.5
169,136 + GFF4799 0.17 -2.6
169,137 - GFF4799 0.17 -0.2
169,189 + GFF4799 0.22 +0.2
169,189 + GFF4799 0.22 -0.3
169,189 + GFF4799 0.22 +0.5
169,189 + GFF4799 0.22 -0.9
169,189 + GFF4799 0.22 -0.4
169,220 + GFF4799 0.25 -0.0
169,220 + GFF4799 0.25 -0.9
169,221 - GFF4799 0.25 -0.1
169,221 - GFF4799 0.25 -0.4
169,221 - GFF4799 0.25 -0.9
169,221 - GFF4799 0.25 +1.4
169,484 + GFF4799 0.52 -0.2
169,484 + GFF4799 0.52 -0.2
169,484 + GFF4799 0.52 +0.4
169,484 + GFF4799 0.52 +0.6
169,484 + GFF4799 0.52 +1.4
169,484 + GFF4799 0.52 +0.4
169,484 + GFF4799 0.52 +0.6
169,484 + GFF4799 0.52 -0.7
169,484 + GFF4799 0.52 -0.1
169,484 + GFF4799 0.52 +0.4
169,484 + GFF4799 0.52 -0.8
169,484 + GFF4799 0.52 -0.9
169,484 + GFF4799 0.52 -0.7
169,485 - GFF4799 0.53 -1.2
169,485 - GFF4799 0.53 -0.6
169,485 - GFF4799 0.53 +3.4
169,485 - GFF4799 0.53 -0.4
169,667 + GFF4799 0.71 +0.1
169,667 + GFF4799 0.71 +0.1
169,667 + GFF4799 0.71 -0.9
169,667 + GFF4799 0.71 -0.0
169,668 - GFF4799 0.71 -0.8
169,668 - GFF4799 0.71 -0.8
169,668 - GFF4799 0.71 -2.8
169,685 + GFF4799 0.73 -1.1
169,685 + GFF4799 0.73 -0.1
169,685 + GFF4799 0.73 -0.5
169,685 + GFF4799 0.73 -1.7
169,686 - GFF4799 0.73 -0.0
169,686 - GFF4799 0.73 -1.0
169,686 - GFF4799 0.73 +0.4
169,686 - GFF4799 0.73 -1.0
169,686 - GFF4799 0.73 -0.4
169,686 - GFF4799 0.73 -1.0
169,741 + GFF4799 0.79 -1.1
169,741 + GFF4799 0.79 -0.3
169,741 + GFF4799 0.79 +0.4
169,742 - GFF4799 0.79 -0.2
169,742 - GFF4799 0.79 -0.4
169,974 + +0.4
170,023 + +1.4
170,062 + +0.7
170,062 + -0.1
170,062 + +0.8
170,062 + +1.4
170,062 + -0.7
170,062 + +0.9
170,062 + +0.8
170,062 + -0.7
170,062 + -0.6
170,062 + -0.1
170,063 - -0.1
170,063 - -0.6
170,063 - +0.8
170,063 - +2.1
170,063 - +0.7
170,063 - +1.2
170,063 - -0.4
170,063 - -0.3
170,063 - -1.9
170,063 - -0.0
170,063 - -0.2
170,063 - -0.7
170,063 - -0.3
170,068 - +1.8
170,118 + +0.2
170,118 + +0.0
170,118 + -0.3
170,118 + -1.6
170,118 + -1.6
170,118 + +0.1
170,119 - -0.7
170,119 - -0.1
170,119 - -0.5
170,244 + -0.4
170,244 + -0.0
170,245 - +1.6
170,543 + GFF4800 0.21 -2.6
170,544 - GFF4800 0.21 +1.4
170,608 + GFF4800 0.25 +1.0
170,608 + GFF4800 0.25 +1.2
170,609 - GFF4800 0.25 -0.2
170,609 - GFF4800 0.25 -0.0
170,677 + GFF4800 0.28 -0.0
170,677 + GFF4800 0.28 -0.4
170,677 + GFF4800 0.28 +0.1
170,677 + GFF4800 0.28 -0.8
170,677 + GFF4800 0.28 -0.9
170,677 + GFF4800 0.28 +0.4
170,677 + GFF4800 0.28 -1.2
170,677 + GFF4800 0.28 +1.4
170,677 + GFF4800 0.28 -0.8
170,677 + GFF4800 0.28 +0.4
170,677 + GFF4800 0.28 +0.2
170,677 + GFF4800 0.28 +0.3
170,677 + GFF4800 0.28 -0.7
170,677 + GFF4800 0.28 -0.5
170,677 + GFF4800 0.28 +1.0
170,677 + GFF4800 0.28 +1.7
170,677 + GFF4800 0.28 -0.5
170,677 + GFF4800 0.28 -0.3
170,677 + GFF4800 0.28 +0.0
170,677 + GFF4800 0.28 -0.0
170,677 + GFF4800 0.28 -0.8
170,677 + GFF4800 0.28 +0.2
170,677 + GFF4800 0.28 +0.3
170,677 + GFF4800 0.28 +0.0
170,677 + GFF4800 0.28 +0.1
170,677 + GFF4800 0.28 +0.6
170,678 - GFF4800 0.28 +0.4
170,678 - GFF4800 0.28 -0.6
170,678 - GFF4800 0.28 -0.4
170,678 - GFF4800 0.28 +0.0
170,678 - GFF4800 0.28 +0.1
170,678 - GFF4800 0.28 -0.5
170,678 - GFF4800 0.28 -3.1
170,678 - GFF4800 0.28 -0.1
170,678 - GFF4800 0.28 -0.0
170,678 - GFF4800 0.28 +0.3
170,678 - GFF4800 0.28 -0.2
170,678 - GFF4800 0.28 -0.9
170,678 - GFF4800 0.28 -0.1
170,678 - GFF4800 0.28 -0.4
170,678 - GFF4800 0.28 +3.7
170,678 - GFF4800 0.28 -0.4
170,678 - GFF4800 0.28 +0.1
170,678 - GFF4800 0.28 -2.3
170,678 - GFF4800 0.28 +0.1

Or see this region's nucleotide sequence