Strain Fitness in Variovorax sp. SCN45 around GFF4200

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
114,851	+		GFF4199	0.51	+0.9
114,852	-		GFF4199	0.51	+0.0
114,863	+		GFF4199	0.52	+0.9
114,863	+		GFF4199	0.52	-0.7
114,863	+		GFF4199	0.52	+0.1
114,863	+		GFF4199	0.52	-1.3
114,864	-		GFF4199	0.52	+0.7
115,833	+		GFF4200	0.43	-0.5
115,833	+		GFF4200	0.43	-1.1
115,833	+		GFF4200	0.43	-2.3
115,833	+		GFF4200	0.43	-0.4
115,833	+		GFF4200	0.43	-0.6
115,834	-		GFF4200	0.43	-0.3
115,834	-		GFF4200	0.43	+0.4
115,834	-		GFF4200	0.43	-0.2
115,834	-		GFF4200	0.43	-0.4
115,834	-		GFF4200	0.43	-1.4
115,847	+		GFF4200	0.44	-0.8
115,847	+		GFF4200	0.44	-0.5
116,412	+				-0.3
116,412	+				-1.1
116,412	+				-1.0
116,412	+				+0.8
116,413	-				-0.4
116,413	-				-0.6
116,413	-				-0.5
116,413	-				-0.0
116,413	-				-1.5
116,413	-				+0.0
116,415	-				-0.6
116,946	+		GFF4201	0.40	-1.8
116,947	-		GFF4201	0.40	-0.9
117,291	+		GFF4201	0.71	-0.2
117,291	+		GFF4201	0.71	-0.6
117,291	+		GFF4201	0.71	-0.8
117,291	+		GFF4201	0.71	+0.3
117,291	+		GFF4201	0.71	-1.0
117,292	-		GFF4201	0.71	-1.2