Strain Fitness in Variovorax sp. SCN45 around GFF4179

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
82,206	-				-0.0
82,284	-		GFF4178	0.13	+0.2
82,292	+		GFF4178	0.14	+0.6
82,292	+		GFF4178	0.14	-0.6
82,701	+		GFF4178	0.62	-0.2
82,701	+		GFF4178	0.62	+1.0
82,701	+		GFF4178	0.62	+0.2
82,701	+		GFF4178	0.62	+0.7
82,702	-		GFF4178	0.62	+0.7
82,702	-		GFF4178	0.62	+0.1
82,785	+		GFF4178	0.71	-1.0
82,786	-		GFF4178	0.72	-0.0
82,796	+		GFF4178	0.73	+0.5
82,844	+		GFF4178	0.78	-0.3
82,989	+				+0.4
82,989	+				-0.1
83,089	-				+0.6
83,089	-				-1.3
83,214	+		GFF4179	0.21	-1.0
83,216	+		GFF4179	0.21	-0.1
83,216	+		GFF4179	0.21	+0.3
83,216	+		GFF4179	0.21	-0.6
83,217	-		GFF4179	0.21	-0.6
83,361	+		GFF4179	0.45	+1.4
83,361	+		GFF4179	0.45	+0.9
83,361	+		GFF4179	0.45	-1.6
83,412	+		GFF4179	0.54	+1.1
83,412	+		GFF4179	0.54	-0.2
83,451	+		GFF4179	0.60	-0.5
83,452	-		GFF4179	0.60	+0.4
83,460	+		GFF4179	0.62	+1.3
83,460	+		GFF4179	0.62	+0.5
83,461	-		GFF4179	0.62	+1.0
83,500	-		GFF4179	0.68	-0.1
83,514	+		GFF4179	0.70	+0.0
83,514	+		GFF4179	0.70	+0.5
83,514	+		GFF4179	0.70	+0.2
83,515	-		GFF4179	0.71	-0.2
83,613	+		GFF4179	0.87	+0.8
83,613	+		GFF4179	0.87	+0.5
83,613	+		GFF4179	0.87	+1.3
83,613	+		GFF4179	0.87	-0.2
83,613	+		GFF4179	0.87	+0.9
83,613	+		GFF4179	0.87	-0.3
83,613	+		GFF4179	0.87	-0.3
83,614	-		GFF4179	0.87	+0.1
83,614	-		GFF4179	0.87	-0.7
83,614	-		GFF4179	0.87	-1.8
83,634	+				-0.3
83,634	+				+0.4
83,634	+				+1.3
83,634	+				-0.2
83,634	+				-1.2
83,634	+				-0.4
83,635	-				-0.0
83,635	-				-0.9
83,635	-				-1.6
83,635	-				+0.5
83,635	-				-0.6
83,635	-				+1.7
83,674	+				-0.5
83,674	+				-0.8
83,675	-				-1.1
83,887	-				-2.4
83,963	+				+1.3
84,048	+				+0.3
84,048	+				-1.5
84,049	-				+0.2
84,049	-				-0.1
84,064	+				+0.5
84,250	+		GFF4180	0.16	+0.3
84,250	+		GFF4180	0.16	-0.8
84,251	-		GFF4180	0.16	+0.7
84,251	-		GFF4180	0.16	-0.0
84,569	+		GFF4180	0.29	-1.1
84,569	+		GFF4180	0.29	-0.3
84,612	+		GFF4180	0.31	+0.1
84,612	+		GFF4180	0.31	-0.9
84,612	+		GFF4180	0.31	+0.7
84,612	+		GFF4180	0.31	-1.8
84,612	+		GFF4180	0.31	+2.3
84,612	+		GFF4180	0.31	-0.8
84,612	+		GFF4180	0.31	+1.7
84,613	-		GFF4180	0.31	+0.2
84,613	-		GFF4180	0.31	+0.1
84,613	-		GFF4180	0.31	-0.7
84,613	-		GFF4180	0.31	-0.3
84,613	-		GFF4180	0.31	-0.8
84,613	-		GFF4180	0.31	-0.4