Strain Fitness in Variovorax sp. SCN45 around GFF4171

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4170 and GFF4171 are separated by 34 nucleotidesGFF4171 and GFF4172 are separated by 131 nucleotidesGFF4172 and GFF4173 are separated by 97 nucleotides GFF4170 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 74,898 to 76,454 GFF4170 GFF4171 - hypothetical protein, at 76,489 to 77,337 GFF4171 GFF4172 - no description, at 77,469 to 78,149 GFF4172 GFF4173 - 5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase (EC 2.1.1.14), at 78,247 to 79,272 GFF4173 Position (kb) 76 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 75.529 kb on + strand, within GFF4170at 76.114 kb on + strand, within GFF4170at 76.114 kb on + strand, within GFF4170at 76.115 kb on - strand, within GFF4170at 76.198 kb on + strand, within GFF4170at 76.198 kb on + strand, within GFF4170at 76.199 kb on - strand, within GFF4170at 76.199 kb on - strand, within GFF4170at 76.199 kb on - strand, within GFF4170at 77.063 kb on + strand, within GFF4171at 77.063 kb on + strand, within GFF4171at 77.063 kb on + strand, within GFF4171at 77.063 kb on + strand, within GFF4171at 77.063 kb on + strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.070 kb on - strand, within GFF4171at 77.070 kb on - strand, within GFF4171at 77.070 kb on - strand, within GFF4171at 77.070 kb on - strand, within GFF4171at 77.126 kb on - strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.253 kb on - strandat 77.253 kb on - strandat 77.253 kb on - strandat 77.253 kb on - strandat 77.253 kb on - strandat 77.261 kb on + strandat 77.261 kb on + strandat 77.261 kb on + strandat 77.261 kb on + strandat 77.262 kb on - strandat 77.262 kb on - strandat 77.262 kb on - strandat 77.262 kb on - strandat 77.262 kb on - strandat 77.291 kb on + strandat 77.291 kb on + strandat 77.291 kb on + strandat 77.291 kb on + strandat 77.291 kb on + strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.386 kb on + strandat 77.392 kb on + strandat 77.392 kb on + strandat 77.451 kb on + strandat 77.451 kb on + strandat 77.514 kb on - strandat 77.514 kb on - strandat 77.643 kb on + strand, within GFF4172at 77.728 kb on - strand, within GFF4172at 77.728 kb on - strand, within GFF4172at 77.728 kb on - strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 78.125 kb on + strandat 78.128 kb on + strandat 78.192 kb on + strandat 78.192 kb on + strandat 78.193 kb on - strandat 78.193 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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75,529 + GFF4170 0.41 +0.0
76,114 + GFF4170 0.78 -0.8
76,114 + GFF4170 0.78 -0.5
76,115 - GFF4170 0.78 -0.3
76,198 + GFF4170 0.83 -0.3
76,198 + GFF4170 0.83 +0.4
76,199 - GFF4170 0.84 -1.0
76,199 - GFF4170 0.84 -0.8
76,199 - GFF4170 0.84 +1.4
77,063 + GFF4171 0.68 +1.0
77,063 + GFF4171 0.68 -0.4
77,063 + GFF4171 0.68 +0.2
77,063 + GFF4171 0.68 -1.2
77,063 + GFF4171 0.68 -0.6
77,064 - GFF4171 0.68 -0.6
77,064 - GFF4171 0.68 +0.2
77,064 - GFF4171 0.68 +0.4
77,064 - GFF4171 0.68 -0.3
77,064 - GFF4171 0.68 -2.0
77,064 - GFF4171 0.68 -0.2
77,069 + GFF4171 0.68 -0.3
77,069 + GFF4171 0.68 +3.3
77,069 + GFF4171 0.68 -0.1
77,069 + GFF4171 0.68 -0.4
77,069 + GFF4171 0.68 +0.1
77,069 + GFF4171 0.68 -1.4
77,070 - GFF4171 0.68 +0.2
77,070 - GFF4171 0.68 +1.4
77,070 - GFF4171 0.68 +0.2
77,070 - GFF4171 0.68 +2.3
77,126 - GFF4171 0.75 +0.1
77,252 + GFF4171 0.90 -0.3
77,252 + GFF4171 0.90 +0.7
77,252 + GFF4171 0.90 +0.2
77,252 + GFF4171 0.90 -0.7
77,252 + GFF4171 0.90 -0.9
77,252 + GFF4171 0.90 +0.6
77,252 + GFF4171 0.90 +0.1
77,252 + GFF4171 0.90 +0.6
77,252 + GFF4171 0.90 -0.7
77,252 + GFF4171 0.90 +0.5
77,252 + GFF4171 0.90 -0.6
77,253 - -0.5
77,253 - -0.6
77,253 - -0.8
77,253 - +0.1
77,253 - +1.0
77,261 + +0.3
77,261 + +0.5
77,261 + +0.4
77,261 + +0.3
77,262 - +0.6
77,262 - -2.5
77,262 - -1.2
77,262 - +0.1
77,262 - +1.3
77,291 + -0.2
77,291 + +0.3
77,291 + +0.1
77,291 + +0.0
77,291 + +0.3
77,292 - +0.2
77,292 - -0.4
77,292 - +0.2
77,292 - -0.0
77,292 - -0.4
77,292 - -0.3
77,386 + -0.6
77,392 + -0.3
77,392 + +1.1
77,451 + +0.0
77,451 + +0.1
77,514 - +0.9
77,514 - -0.0
77,643 + GFF4172 0.26 -1.2
77,728 - GFF4172 0.38 +0.1
77,728 - GFF4172 0.38 -0.6
77,728 - GFF4172 0.38 -0.3
77,730 + GFF4172 0.38 +1.4
77,730 + GFF4172 0.38 -0.8
77,730 + GFF4172 0.38 -0.9
77,730 + GFF4172 0.38 -0.0
77,730 + GFF4172 0.38 +0.7
77,730 + GFF4172 0.38 -0.9
77,730 + GFF4172 0.38 +0.1
77,730 + GFF4172 0.38 -0.4
77,730 + GFF4172 0.38 -0.4
77,730 + GFF4172 0.38 -1.6
77,730 + GFF4172 0.38 -2.8
77,730 + GFF4172 0.38 -0.1
77,730 - GFF4172 0.38 -0.2
77,731 - GFF4172 0.38 -1.0
77,731 - GFF4172 0.38 +0.3
77,731 - GFF4172 0.38 -1.1
77,731 - GFF4172 0.38 +0.0
77,731 - GFF4172 0.38 -0.9
77,731 - GFF4172 0.38 -0.9
78,125 + +1.7
78,128 + +0.8
78,192 + +0.3
78,192 + +0.9
78,193 - -0.6
78,193 - -0.6

Or see this region's nucleotide sequence