Strain Fitness in Variovorax sp. SCN45 around GFF3906

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
108,126	+		GFF3905	0.72	-1.4
108,127	-		GFF3905	0.72	-0.9
108,175	-		GFF3905	0.74	+1.9
108,529	-		GFF3905	0.87	-0.4
108,678	+				+1.6
108,744	+				-0.3
108,744	+				+0.2
108,744	+				-0.9
108,744	+				+1.0
108,744	+				+0.8
108,745	-				+0.4
108,745	-				-0.2
108,745	-				+0.6
108,789	+				-0.3
108,789	+				-0.4
108,789	+				-0.9
108,789	+				-0.0
108,789	+				-0.1
108,789	+				-1.7
108,789	+				+1.2
108,789	+				+0.3
108,790	-				-0.1
108,790	-				+0.9
108,790	-				+1.3
108,790	-				+0.0
108,790	-				-1.2
108,790	-				-0.9
108,790	-				-2.1
108,790	-				-1.0
108,790	-				+0.0
108,795	+				-0.5
108,795	+				-0.4
108,796	-				-0.7
108,822	+				+0.2
108,822	+				-0.6
108,823	-				+0.2
108,823	-				-0.4
108,823	-				-0.0
108,823	-				-1.4
108,823	-				-0.7
108,823	-				+0.2
108,968	+				+0.8
108,969	-				-0.6
108,969	-				-0.5
109,233	-				+0.3
109,485	-		GFF3906	0.20	+0.2
109,511	+		GFF3906	0.21	+0.1
109,511	+		GFF3906	0.21	-1.4
109,511	+		GFF3906	0.21	-0.3
109,511	+		GFF3906	0.21	-1.2
109,568	+		GFF3906	0.24	-0.2
109,673	+		GFF3906	0.28	+0.0
109,673	+		GFF3906	0.28	-0.3
109,673	+		GFF3906	0.28	+3.9
109,673	+		GFF3906	0.28	-0.5
109,673	+		GFF3906	0.28	-0.3
109,673	+		GFF3906	0.28	+0.6
109,674	-		GFF3906	0.28	-0.4
109,674	-		GFF3906	0.28	+1.0
109,674	-		GFF3906	0.28	-0.3
109,674	-		GFF3906	0.28	+0.4
110,004	+		GFF3906	0.43	-2.4
110,004	+		GFF3906	0.43	+0.3
110,005	-		GFF3906	0.43	-0.9
110,005	-		GFF3906	0.43	+0.1
110,005	-		GFF3906	0.43	-0.1
110,005	-		GFF3906	0.43	+0.8
110,006	+		GFF3906	0.43	-0.5
110,006	+		GFF3906	0.43	-0.3
110,006	+		GFF3906	0.43	-0.1
110,006	+		GFF3906	0.43	-0.2
110,006	+		GFF3906	0.43	-0.6
110,006	+		GFF3906	0.43	+0.0
110,006	+		GFF3906	0.43	-0.3
110,006	+		GFF3906	0.43	-0.2
110,006	+		GFF3906	0.43	+1.3
110,006	+		GFF3906	0.43	+0.3
110,006	+		GFF3906	0.43	+0.0
110,006	+		GFF3906	0.43	+0.2
110,006	+		GFF3906	0.43	+1.3
110,006	+		GFF3906	0.43	-0.6
110,006	+		GFF3906	0.43	+0.6
110,006	+		GFF3906	0.43	+1.2
110,006	+		GFF3906	0.43	-1.2
110,007	-		GFF3906	0.43	-1.1
110,007	-		GFF3906	0.43	+0.1
110,007	-		GFF3906	0.43	+0.0
110,007	-		GFF3906	0.43	-0.1
110,007	-		GFF3906	0.43	+2.6
110,007	-		GFF3906	0.43	-0.7
110,007	-		GFF3906	0.43	-1.0
110,007	-		GFF3906	0.43	+0.4
110,007	-		GFF3906	0.43	+0.3
110,108	+		GFF3906	0.47	+0.6
110,108	+		GFF3906	0.47	-0.7
110,108	+		GFF3906	0.47	-0.1
110,109	-		GFF3906	0.48	-0.4
110,109	-		GFF3906	0.48	-0.5
110,264	+		GFF3906	0.54	-0.5
110,264	+		GFF3906	0.54	-1.4
110,265	-		GFF3906	0.54	-0.5
110,265	-		GFF3906	0.54	+0.1
110,265	-		GFF3906	0.54	+0.2
110,535	+		GFF3906	0.66	+0.9
110,535	+		GFF3906	0.66	-0.1
110,536	-		GFF3906	0.66	+0.1
110,536	-		GFF3906	0.66	+0.3
110,536	-		GFF3906	0.66	+0.3
110,577	-		GFF3906	0.68	-1.3
110,675	+		GFF3906	0.72	+1.0
110,675	+		GFF3906	0.72	-2.1
110,675	+		GFF3906	0.72	-1.6
110,675	+		GFF3906	0.72	+1.0
110,675	+		GFF3906	0.72	+0.3
110,676	-		GFF3906	0.72	+0.0
110,676	-		GFF3906	0.72	-0.5
110,676	-		GFF3906	0.72	+0.0
110,676	-		GFF3906	0.72	+0.1
110,676	-		GFF3906	0.72	-0.1
110,676	-		GFF3906	0.72	+0.1
110,676	-		GFF3906	0.72	+0.1
110,796	-		GFF3906	0.78	-0.4
110,796	-		GFF3906	0.78	-0.5
110,796	-		GFF3906	0.78	-0.8
111,111	-				-0.8
111,111	-				-2.7
111,784	+				-0.3
111,785	-				+0.8
111,904	+				-1.6
111,904	+				+0.0
111,904	+				+0.2
111,904	+				+1.4
111,904	+				-0.2
111,904	+				-0.2
111,904	+				-2.3
111,904	+				+0.6
111,904	+				+0.0
111,904	+				+0.8
111,905	-				-0.8
111,905	-				-0.4
111,905	-				-0.6
111,905	-				+0.2
111,905	-				-2.7
111,905	-				-1.1
111,905	-				+0.2
111,905	-				+0.5
111,905	-				-0.1
112,145	-				-0.2
112,155	+				-1.6
112,156	-				-1.1
112,158	+				-0.4
112,158	+				+0.8
112,159	-				+0.7
112,159	-				-0.3
112,159	-				-0.4
112,159	-				-0.8
112,159	-				-0.4
112,159	-				+1.6