Strain Fitness in Variovorax sp. SCN45 around GFF3771

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3770 and GFF3771 are separated by 72 nucleotidesGFF3771 and GFF3772 overlap by 4 nucleotidesGFF3772 and GFF3773 are separated by 10 nucleotides GFF3770 - hypothetical protein, at 261,504 to 262,868 GFF3770 GFF3771 - no description, at 262,941 to 263,495 GFF3771 GFF3772 - Arginase (EC 3.5.3.1), at 263,492 to 264,412 GFF3772 GFF3773 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 264,423 to 265,403 GFF3773 Position (kb) 262 263 264Strain fitness (log2 ratio) -2 -1 0 1 2at 262.041 kb on + strand, within GFF3770at 262.041 kb on + strand, within GFF3770at 262.092 kb on + strand, within GFF3770at 262.092 kb on + strand, within GFF3770at 262.092 kb on + strand, within GFF3770at 262.092 kb on + strand, within GFF3770at 262.092 kb on + strand, within GFF3770at 262.092 kb on + strand, within GFF3770at 262.093 kb on - strand, within GFF3770at 262.093 kb on - strand, within GFF3770at 262.093 kb on - strand, within GFF3770at 262.093 kb on - strand, within GFF3770at 262.137 kb on + strand, within GFF3770at 262.347 kb on + strand, within GFF3770at 262.347 kb on + strand, within GFF3770at 262.347 kb on + strand, within GFF3770at 262.347 kb on + strand, within GFF3770at 262.347 kb on + strand, within GFF3770at 262.347 kb on + strand, within GFF3770at 262.348 kb on - strand, within GFF3770at 262.348 kb on - strand, within GFF3770at 262.348 kb on - strand, within GFF3770at 262.348 kb on - strand, within GFF3770at 262.503 kb on + strand, within GFF3770at 262.504 kb on - strand, within GFF3770at 262.504 kb on - strand, within GFF3770at 262.866 kb on + strandat 262.899 kb on + strandat 262.899 kb on + strandat 262.900 kb on - strandat 262.900 kb on - strandat 262.900 kb on - strandat 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.002 kb on - strand, within GFF3771at 263.002 kb on - strand, within GFF3771at 263.002 kb on - strand, within GFF3771at 263.002 kb on - strand, within GFF3771at 263.002 kb on - strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.088 kb on + strand, within GFF3771at 263.089 kb on - strand, within GFF3771at 263.203 kb on - strand, within GFF3771at 263.203 kb on - strand, within GFF3771at 263.214 kb on + strand, within GFF3771at 263.214 kb on + strand, within GFF3771at 263.214 kb on + strand, within GFF3771at 263.214 kb on + strand, within GFF3771at 263.214 kb on + strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.445 kb on + strandat 263.445 kb on + strandat 263.446 kb on - strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.455 kb on - strandat 263.455 kb on - strandat 263.455 kb on - strandat 263.455 kb on - strandat 263.493 kb on + strandat 263.655 kb on + strand, within GFF3772at 263.656 kb on - strand, within GFF3772at 264.380 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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262,041 + GFF3770 0.39 +0.1
262,041 + GFF3770 0.39 -0.2
262,092 + GFF3770 0.43 +1.4
262,092 + GFF3770 0.43 +1.1
262,092 + GFF3770 0.43 +1.1
262,092 + GFF3770 0.43 -0.4
262,092 + GFF3770 0.43 -1.0
262,092 + GFF3770 0.43 +0.3
262,093 - GFF3770 0.43 +0.1
262,093 - GFF3770 0.43 -1.7
262,093 - GFF3770 0.43 -0.2
262,093 - GFF3770 0.43 -1.0
262,137 + GFF3770 0.46 -0.4
262,347 + GFF3770 0.62 +0.8
262,347 + GFF3770 0.62 +0.8
262,347 + GFF3770 0.62 -0.0
262,347 + GFF3770 0.62 -0.4
262,347 + GFF3770 0.62 +0.2
262,347 + GFF3770 0.62 -0.8
262,348 - GFF3770 0.62 -0.7
262,348 - GFF3770 0.62 +2.0
262,348 - GFF3770 0.62 +0.3
262,348 - GFF3770 0.62 -1.0
262,503 + GFF3770 0.73 -0.8
262,504 - GFF3770 0.73 -0.3
262,504 - GFF3770 0.73 +2.5
262,866 + -0.4
262,899 + -0.1
262,899 + +0.4
262,900 - -0.2
262,900 - -0.4
262,900 - +0.9
263,001 + GFF3771 0.11 -1.8
263,001 + GFF3771 0.11 -0.8
263,001 + GFF3771 0.11 +0.2
263,001 + GFF3771 0.11 -0.0
263,001 + GFF3771 0.11 -0.1
263,001 + GFF3771 0.11 +0.4
263,001 + GFF3771 0.11 +0.4
263,002 - GFF3771 0.11 +0.2
263,002 - GFF3771 0.11 -0.2
263,002 - GFF3771 0.11 -0.1
263,002 - GFF3771 0.11 -0.6
263,002 - GFF3771 0.11 +0.1
263,079 + GFF3771 0.25 +0.2
263,079 + GFF3771 0.25 -0.4
263,079 + GFF3771 0.25 +0.7
263,079 + GFF3771 0.25 +1.6
263,079 + GFF3771 0.25 -1.5
263,079 + GFF3771 0.25 -0.5
263,079 + GFF3771 0.25 +1.1
263,080 - GFF3771 0.25 -0.1
263,080 - GFF3771 0.25 -0.1
263,080 - GFF3771 0.25 -0.6
263,080 - GFF3771 0.25 -0.9
263,080 - GFF3771 0.25 +0.9
263,080 - GFF3771 0.25 -0.4
263,080 - GFF3771 0.25 -0.1
263,088 + GFF3771 0.26 -1.6
263,089 - GFF3771 0.27 +0.5
263,203 - GFF3771 0.47 -1.0
263,203 - GFF3771 0.47 -0.5
263,214 + GFF3771 0.49 +1.2
263,214 + GFF3771 0.49 +0.7
263,214 + GFF3771 0.49 -0.2
263,214 + GFF3771 0.49 +0.8
263,214 + GFF3771 0.49 -0.6
263,215 - GFF3771 0.49 +0.1
263,215 - GFF3771 0.49 +0.2
263,215 - GFF3771 0.49 +0.0
263,215 - GFF3771 0.49 -0.5
263,215 - GFF3771 0.49 +0.2
263,215 - GFF3771 0.49 -0.1
263,215 - GFF3771 0.49 -1.3
263,215 - GFF3771 0.49 +0.1
263,215 - GFF3771 0.49 -0.6
263,215 - GFF3771 0.49 -0.5
263,215 - GFF3771 0.49 -0.2
263,445 + +0.5
263,445 + -0.2
263,446 - +0.6
263,454 + +0.3
263,454 + -0.4
263,454 + +0.6
263,454 + +0.1
263,454 + -1.3
263,454 + -1.5
263,454 + +0.4
263,455 - -1.0
263,455 - -0.7
263,455 - +0.2
263,455 - -0.5
263,493 + -0.5
263,655 + GFF3772 0.18 -0.5
263,656 - GFF3772 0.18 +1.2
264,380 + -0.2

Or see this region's nucleotide sequence