Strain Fitness in Variovorax sp. SCN45 around GFF3659

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3656 and GFF3657 are separated by 124 nucleotidesGFF3657 and GFF3658 overlap by 7 nucleotidesGFF3658 and GFF3659 overlap by 1 nucleotidesGFF3659 and GFF3660 overlap by 4 nucleotides GFF3656 - hypothetical protein, at 159,545 to 160,009 GFF3656 GFF3657 - Mlr5572 protein, at 160,134 to 160,526 GFF3657 GFF3658 - hypothetical protein, at 160,520 to 160,906 GFF3658 GFF3659 - Two-component transcriptional response regulator, OmpR family, at 160,906 to 161,649 GFF3659 GFF3660 - integral membrane sensor signal transduction histidine kinase, at 161,646 to 163,073 GFF3660 Position (kb) 160 161 162Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 160.008 kb on - strandat 160.008 kb on - strandat 160.074 kb on + strandat 160.075 kb on - strandat 160.075 kb on - strandat 160.075 kb on - strandat 160.222 kb on - strand, within GFF3657at 160.222 kb on - strand, within GFF3657at 160.230 kb on + strand, within GFF3657at 160.230 kb on + strand, within GFF3657at 160.293 kb on + strand, within GFF3657at 160.326 kb on + strand, within GFF3657at 160.326 kb on + strand, within GFF3657at 160.326 kb on + strand, within GFF3657at 160.326 kb on + strand, within GFF3657at 160.326 kb on + strand, within GFF3657at 160.327 kb on - strand, within GFF3657at 160.327 kb on - strand, within GFF3657at 160.327 kb on - strand, within GFF3657at 160.327 kb on - strand, within GFF3657at 160.344 kb on + strand, within GFF3657at 160.344 kb on + strand, within GFF3657at 160.344 kb on + strand, within GFF3657at 160.344 kb on + strand, within GFF3657at 160.344 kb on + strand, within GFF3657at 160.344 kb on + strand, within GFF3657at 160.345 kb on - strand, within GFF3657at 160.345 kb on - strand, within GFF3657at 160.345 kb on - strand, within GFF3657at 160.345 kb on - strand, within GFF3657at 160.345 kb on - strand, within GFF3657at 160.345 kb on - strand, within GFF3657at 160.345 kb on - strand, within GFF3657at 160.345 kb on - strand, within GFF3657at 160.467 kb on + strand, within GFF3657at 160.467 kb on + strand, within GFF3657at 160.467 kb on + strand, within GFF3657at 160.467 kb on + strand, within GFF3657at 160.468 kb on - strand, within GFF3657at 160.468 kb on - strand, within GFF3657at 160.468 kb on - strand, within GFF3657at 160.468 kb on - strand, within GFF3657at 160.468 kb on - strand, within GFF3657at 160.468 kb on - strand, within GFF3657at 160.468 kb on - strand, within GFF3657at 160.625 kb on + strand, within GFF3658at 160.626 kb on - strand, within GFF3658at 160.626 kb on - strand, within GFF3658at 160.626 kb on - strand, within GFF3658at 160.838 kb on + strand, within GFF3658at 160.838 kb on + strand, within GFF3658at 160.839 kb on - strand, within GFF3658at 160.839 kb on - strand, within GFF3658at 160.839 kb on - strand, within GFF3658at 160.839 kb on - strand, within GFF3658at 161.014 kb on + strand, within GFF3659at 161.014 kb on + strand, within GFF3659at 161.014 kb on + strand, within GFF3659at 161.014 kb on + strand, within GFF3659at 161.014 kb on + strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.092 kb on + strand, within GFF3659at 161.093 kb on - strand, within GFF3659at 161.093 kb on - strand, within GFF3659at 161.248 kb on + strand, within GFF3659at 161.248 kb on + strand, within GFF3659at 161.248 kb on + strand, within GFF3659at 161.248 kb on + strand, within GFF3659at 161.248 kb on + strand, within GFF3659at 161.249 kb on - strand, within GFF3659at 161.249 kb on - strand, within GFF3659at 161.249 kb on - strand, within GFF3659at 161.527 kb on + strand, within GFF3659at 161.527 kb on + strand, within GFF3659at 161.527 kb on + strand, within GFF3659at 161.528 kb on - strand, within GFF3659at 161.528 kb on - strand, within GFF3659at 161.614 kb on + strandat 161.615 kb on - strandat 161.913 kb on + strand, within GFF3660at 161.914 kb on - strand, within GFF3660at 161.914 kb on - strand, within GFF3660at 161.914 kb on - strand, within GFF3660at 161.914 kb on - strand, within GFF3660at 162.249 kb on + strand, within GFF3660at 162.249 kb on + strand, within GFF3660at 162.249 kb on + strand, within GFF3660at 162.249 kb on + strand, within GFF3660at 162.249 kb on + strand, within GFF3660at 162.249 kb on + strand, within GFF3660at 162.249 kb on + strand, within GFF3660at 162.250 kb on - strand, within GFF3660at 162.250 kb on - strand, within GFF3660at 162.250 kb on - strand, within GFF3660at 162.250 kb on - strand, within GFF3660at 162.250 kb on - strand, within GFF3660at 162.250 kb on - strand, within GFF3660at 162.250 kb on - strand, within GFF3660at 162.250 kb on - strand, within GFF3660at 162.255 kb on + strand, within GFF3660at 162.255 kb on + strand, within GFF3660at 162.255 kb on + strand, within GFF3660at 162.255 kb on + strand, within GFF3660at 162.255 kb on + strand, within GFF3660at 162.255 kb on + strand, within GFF3660at 162.255 kb on + strand, within GFF3660at 162.255 kb on + strand, within GFF3660at 162.255 kb on + strand, within GFF3660at 162.255 kb on + strand, within GFF3660at 162.255 kb on + strand, within GFF3660at 162.255 kb on + strand, within GFF3660at 162.255 kb on + strand, within GFF3660at 162.256 kb on - strand, within GFF3660at 162.256 kb on - strand, within GFF3660at 162.256 kb on - strand, within GFF3660at 162.256 kb on - strand, within GFF3660at 162.256 kb on - strand, within GFF3660at 162.256 kb on - strand, within GFF3660at 162.256 kb on - strand, within GFF3660at 162.256 kb on - strand, within GFF3660

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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159,926 + GFF3656 0.82 -0.6
159,926 + GFF3656 0.82 +0.4
159,926 + GFF3656 0.82 +0.2
159,926 + GFF3656 0.82 -1.2
159,926 + GFF3656 0.82 -0.1
159,926 + GFF3656 0.82 -0.8
159,926 + GFF3656 0.82 -0.7
159,926 + GFF3656 0.82 -0.1
159,926 + GFF3656 0.82 +3.2
159,926 + GFF3656 0.82 -0.3
159,926 + GFF3656 0.82 -0.2
159,926 + GFF3656 0.82 -0.1
159,927 - GFF3656 0.82 +0.7
159,927 - GFF3656 0.82 +0.4
159,927 - GFF3656 0.82 -0.2
159,927 - GFF3656 0.82 -0.5
159,927 - GFF3656 0.82 -0.1
159,927 - GFF3656 0.82 -0.3
159,927 - GFF3656 0.82 +0.0
159,927 - GFF3656 0.82 +0.0
159,927 - GFF3656 0.82 +0.9
159,927 - GFF3656 0.82 -0.7
159,927 - GFF3656 0.82 -0.3
160,008 - +1.8
160,008 - -0.2
160,074 + +0.9
160,075 - +1.0
160,075 - -0.7
160,075 - -0.7
160,222 - GFF3657 0.22 -0.1
160,222 - GFF3657 0.22 +0.1
160,230 + GFF3657 0.24 +1.1
160,230 + GFF3657 0.24 -0.6
160,293 + GFF3657 0.40 +0.1
160,326 + GFF3657 0.49 -0.4
160,326 + GFF3657 0.49 -0.8
160,326 + GFF3657 0.49 -1.2
160,326 + GFF3657 0.49 +0.4
160,326 + GFF3657 0.49 -1.3
160,327 - GFF3657 0.49 -0.8
160,327 - GFF3657 0.49 -0.8
160,327 - GFF3657 0.49 +0.0
160,327 - GFF3657 0.49 -0.0
160,344 + GFF3657 0.53 -0.4
160,344 + GFF3657 0.53 -1.0
160,344 + GFF3657 0.53 -0.8
160,344 + GFF3657 0.53 -0.3
160,344 + GFF3657 0.53 +1.8
160,344 + GFF3657 0.53 +1.8
160,345 - GFF3657 0.54 +0.4
160,345 - GFF3657 0.54 +1.0
160,345 - GFF3657 0.54 -0.4
160,345 - GFF3657 0.54 -2.2
160,345 - GFF3657 0.54 -0.6
160,345 - GFF3657 0.54 -0.3
160,345 - GFF3657 0.54 -0.0
160,345 - GFF3657 0.54 +0.4
160,467 + GFF3657 0.85 -0.7
160,467 + GFF3657 0.85 +2.4
160,467 + GFF3657 0.85 -0.3
160,467 + GFF3657 0.85 -0.1
160,468 - GFF3657 0.85 -0.5
160,468 - GFF3657 0.85 -0.9
160,468 - GFF3657 0.85 +0.8
160,468 - GFF3657 0.85 +0.7
160,468 - GFF3657 0.85 +1.4
160,468 - GFF3657 0.85 +0.9
160,468 - GFF3657 0.85 +0.8
160,625 + GFF3658 0.27 -0.3
160,626 - GFF3658 0.27 +1.4
160,626 - GFF3658 0.27 +0.2
160,626 - GFF3658 0.27 -0.3
160,838 + GFF3658 0.82 -0.1
160,838 + GFF3658 0.82 +0.5
160,839 - GFF3658 0.82 -0.7
160,839 - GFF3658 0.82 +0.0
160,839 - GFF3658 0.82 -1.2
160,839 - GFF3658 0.82 +0.8
161,014 + GFF3659 0.15 +0.0
161,014 + GFF3659 0.15 -0.7
161,014 + GFF3659 0.15 +0.5
161,014 + GFF3659 0.15 -0.3
161,014 + GFF3659 0.15 -0.2
161,015 - GFF3659 0.15 -1.5
161,015 - GFF3659 0.15 -1.2
161,015 - GFF3659 0.15 +0.2
161,015 - GFF3659 0.15 +1.0
161,015 - GFF3659 0.15 -2.0
161,015 - GFF3659 0.15 +1.0
161,015 - GFF3659 0.15 -0.2
161,015 - GFF3659 0.15 +0.3
161,015 - GFF3659 0.15 +0.5
161,092 + GFF3659 0.25 -0.2
161,093 - GFF3659 0.25 +0.2
161,093 - GFF3659 0.25 +0.0
161,248 + GFF3659 0.46 -1.4
161,248 + GFF3659 0.46 +0.1
161,248 + GFF3659 0.46 +0.0
161,248 + GFF3659 0.46 -0.8
161,248 + GFF3659 0.46 -0.3
161,249 - GFF3659 0.46 +0.0
161,249 - GFF3659 0.46 +1.2
161,249 - GFF3659 0.46 -0.0
161,527 + GFF3659 0.83 -0.4
161,527 + GFF3659 0.83 +0.8
161,527 + GFF3659 0.83 +1.8
161,528 - GFF3659 0.84 -0.2
161,528 - GFF3659 0.84 -0.3
161,614 + +0.2
161,615 - -0.8
161,913 + GFF3660 0.19 -0.8
161,914 - GFF3660 0.19 -0.8
161,914 - GFF3660 0.19 -0.8
161,914 - GFF3660 0.19 -1.2
161,914 - GFF3660 0.19 -2.3
162,249 + GFF3660 0.42 -1.0
162,249 + GFF3660 0.42 -1.3
162,249 + GFF3660 0.42 +0.0
162,249 + GFF3660 0.42 -0.8
162,249 + GFF3660 0.42 -1.9
162,249 + GFF3660 0.42 -2.4
162,249 + GFF3660 0.42 -0.1
162,250 - GFF3660 0.42 +1.4
162,250 - GFF3660 0.42 -2.9
162,250 - GFF3660 0.42 +1.5
162,250 - GFF3660 0.42 +0.3
162,250 - GFF3660 0.42 +0.2
162,250 - GFF3660 0.42 -1.8
162,250 - GFF3660 0.42 -0.3
162,250 - GFF3660 0.42 -1.6
162,255 + GFF3660 0.43 -1.6
162,255 + GFF3660 0.43 -0.5
162,255 + GFF3660 0.43 +0.2
162,255 + GFF3660 0.43 -0.8
162,255 + GFF3660 0.43 -0.6
162,255 + GFF3660 0.43 -0.4
162,255 + GFF3660 0.43 -1.6
162,255 + GFF3660 0.43 -0.4
162,255 + GFF3660 0.43 -0.3
162,255 + GFF3660 0.43 -1.2
162,255 + GFF3660 0.43 +0.2
162,255 + GFF3660 0.43 -0.8
162,255 + GFF3660 0.43 +0.2
162,256 - GFF3660 0.43 -1.5
162,256 - GFF3660 0.43 -0.1
162,256 - GFF3660 0.43 -1.3
162,256 - GFF3660 0.43 +0.1
162,256 - GFF3660 0.43 -2.7
162,256 - GFF3660 0.43 -0.6
162,256 - GFF3660 0.43 -1.1
162,256 - GFF3660 0.43 +0.4

Or see this region's nucleotide sequence