Strain Fitness in Variovorax sp. SCN45 around GFF3581

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
92,245	+				+0.0
92,245	+				+0.6
92,246	-				-1.2
92,246	-				-1.2
92,254	+				-1.9
92,401	+				+0.3
92,402	-				+0.5
92,765	-		GFF3581	0.51	-0.9
92,765	-		GFF3581	0.51	+0.4
92,765	-		GFF3581	0.51	-0.7
92,765	-		GFF3581	0.51	-0.7
93,159	+				-0.8
93,159	+				-0.4
93,160	-				+0.5
93,160	-				-0.4
93,160	-				-1.2
93,160	-				+0.3
93,160	-				-1.1
93,228	+				-0.3
93,552	+		GFF3582	0.41	+0.2
93,600	+		GFF3582	0.46	+0.1
93,600	+		GFF3582	0.46	+0.8
93,600	+		GFF3582	0.46	-0.6
93,600	+		GFF3582	0.46	-0.5
93,600	+		GFF3582	0.46	-0.2
93,600	+		GFF3582	0.46	+0.8
93,600	+		GFF3582	0.46	-0.7
93,600	+		GFF3582	0.46	-0.1
93,600	+		GFF3582	0.46	-0.9
93,600	+		GFF3582	0.46	-0.4
93,601	-		GFF3582	0.46	-1.2
93,601	-		GFF3582	0.46	-0.3
93,601	-		GFF3582	0.46	-0.4
93,601	-		GFF3582	0.46	+0.2
93,601	-		GFF3582	0.46	-0.5
93,601	-		GFF3582	0.46	+1.0
93,643	+		GFF3582	0.50	-1.6
93,644	-		GFF3582	0.50	-0.4
93,846	+		GFF3582	0.70	-1.4
93,846	+		GFF3582	0.70	-1.7
93,846	+		GFF3582	0.70	-0.2
93,846	+		GFF3582	0.70	-2.0
93,846	+		GFF3582	0.70	-0.6
93,846	+		GFF3582	0.70	-0.8
93,847	-		GFF3582	0.70	-1.6
93,847	-		GFF3582	0.70	-0.4
93,847	-		GFF3582	0.70	-0.2
93,847	-		GFF3582	0.70	+1.5
93,847	-		GFF3582	0.70	-0.3
93,858	+		GFF3582	0.71	-0.3
93,859	-		GFF3582	0.71	-0.2
93,903	+		GFF3582	0.76	+0.7
93,903	+		GFF3582	0.76	-0.7