Strain Fitness in Variovorax sp. SCN45 around GFF3510

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
14,875	+		GFF3509	0.73	+0.1
14,876	-		GFF3509	0.73	+0.4
14,876	-		GFF3509	0.73	-1.0
14,934	+		GFF3509	0.75	+0.3
14,934	+		GFF3509	0.75	+0.9
14,935	-		GFF3509	0.75	-1.0
15,049	+		GFF3509	0.78	+1.3
15,049	+		GFF3509	0.78	-0.5
15,050	-		GFF3509	0.78	-0.7
15,050	-		GFF3509	0.78	+0.5
15,050	-		GFF3509	0.78	-0.7
15,050	-		GFF3509	0.78	+0.3
15,298	+		GFF3509	0.86	+1.3
15,298	+		GFF3509	0.86	+0.1
15,298	+		GFF3509	0.86	-0.8
15,298	+		GFF3509	0.86	+1.1
15,298	+		GFF3509	0.86	-0.2
15,299	-		GFF3509	0.86	+0.8
15,299	-		GFF3509	0.86	-0.4
15,368	-		GFF3509	0.89	-0.2
15,368	-		GFF3509	0.89	-0.4
15,481	+				-0.2
15,481	+				-0.2
15,565	+				+0.0
15,566	-				+0.0
15,780	+				-0.2
15,780	+				-0.5
15,951	+		GFF3510	0.21	-1.0
15,951	+		GFF3510	0.21	+2.2
15,951	+		GFF3510	0.21	+0.8
15,952	-		GFF3510	0.22	-0.1
16,773	-				-0.3
16,836	-				-0.7
16,860	+				-1.7
16,861	-				+1.2
16,911	-				+0.0
16,911	-				-1.0
17,114	+				-0.2
17,115	-				-0.7
17,139	+				-0.7
17,139	+				-1.0
17,139	+				+0.8
17,139	+				-0.8
17,139	+				+0.9
17,139	+				+0.4
17,140	-				-0.4
17,140	-				-1.0
17,140	-				-0.4
17,140	-				+0.1
17,140	-				+0.1
17,140	-				-0.3
17,231	+				-0.1
17,231	+				+0.4
17,527	+		GFF3511	0.36	-0.2
17,766	+		GFF3511	0.60	-0.7
17,773	+		GFF3511	0.61	+0.3
17,775	-		GFF3511	0.61	-0.0