Strain Fitness in Variovorax sp. SCN45 around GFF3330

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3329 and GFF3330 overlap by 4 nucleotidesGFF3330 and GFF3331 are separated by 158 nucleotidesGFF3331 and GFF3332 are separated by 184 nucleotides GFF3329 - Terpene utilization protein AtuA, at 155,050 to 156,858 GFF3329 GFF3330 - Isohexenylglutaconyl-CoA hydratase (EC 4.2.1.57), at 156,855 to 157,637 GFF3330 GFF3331 - Glutathione S-transferase (EC 2.5.1.18), at 157,796 to 158,404 GFF3331 GFF3332 - UPF0391 membrane protein RPC_2356, at 158,589 to 158,774 GFF3332 Position (kb) 156 157 158Strain fitness (log2 ratio) -2 -1 0 1 2at 155.903 kb on + strand, within GFF3329at 155.903 kb on + strand, within GFF3329at 155.904 kb on - strand, within GFF3329at 155.904 kb on - strand, within GFF3329at 155.921 kb on + strand, within GFF3329at 155.922 kb on - strand, within GFF3329at 155.922 kb on - strand, within GFF3329at 155.922 kb on - strand, within GFF3329at 155.922 kb on - strand, within GFF3329at 155.922 kb on - strand, within GFF3329at 155.922 kb on - strand, within GFF3329at 155.922 kb on - strand, within GFF3329at 156.399 kb on - strand, within GFF3329at 156.399 kb on - strand, within GFF3329at 156.399 kb on - strand, within GFF3329at 156.677 kb on + strand, within GFF3329at 156.677 kb on + strand, within GFF3329at 156.741 kb on - strandat 156.755 kb on + strandat 156.755 kb on + strandat 156.756 kb on - strandat 156.756 kb on - strandat 156.756 kb on - strandat 156.756 kb on - strandat 156.756 kb on - strandat 156.756 kb on - strandat 156.756 kb on - strandat 157.003 kb on + strand, within GFF3330at 157.003 kb on + strand, within GFF3330at 157.003 kb on + strand, within GFF3330at 157.003 kb on + strand, within GFF3330at 157.003 kb on + strand, within GFF3330at 157.003 kb on + strand, within GFF3330at 157.004 kb on - strand, within GFF3330at 157.004 kb on - strand, within GFF3330at 157.004 kb on - strand, within GFF3330at 157.004 kb on - strand, within GFF3330at 157.382 kb on - strand, within GFF3330at 157.393 kb on + strand, within GFF3330at 157.393 kb on + strand, within GFF3330at 157.797 kb on + strandat 157.798 kb on - strandat 157.798 kb on - strandat 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.254 kb on - strand, within GFF3331at 158.254 kb on - strand, within GFF3331at 158.254 kb on - strand, within GFF3331at 158.254 kb on - strand, within GFF3331at 158.274 kb on + strand, within GFF3331at 158.274 kb on + strand, within GFF3331at 158.274 kb on + strand, within GFF3331at 158.275 kb on - strand, within GFF3331at 158.275 kb on - strand, within GFF3331at 158.275 kb on - strand, within GFF3331at 158.278 kb on - strand, within GFF3331at 158.391 kb on + strandat 158.391 kb on + strandat 158.392 kb on - strandat 158.392 kb on - strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.412 kb on - strandat 158.412 kb on - strandat 158.412 kb on - strandat 158.464 kb on + strandat 158.464 kb on + strandat 158.496 kb on - strandat 158.496 kb on - strandat 158.543 kb on + strandat 158.543 kb on + strandat 158.543 kb on + strandat 158.543 kb on + strandat 158.544 kb on - strandat 158.544 kb on - strandat 158.544 kb on - strandat 158.544 kb on - strandat 158.598 kb on + strandat 158.598 kb on + strandat 158.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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155,903 + GFF3329 0.47 +1.4
155,903 + GFF3329 0.47 +0.3
155,904 - GFF3329 0.47 +0.0
155,904 - GFF3329 0.47 -1.6
155,921 + GFF3329 0.48 -1.0
155,922 - GFF3329 0.48 +0.0
155,922 - GFF3329 0.48 -0.4
155,922 - GFF3329 0.48 +0.7
155,922 - GFF3329 0.48 -0.7
155,922 - GFF3329 0.48 -1.1
155,922 - GFF3329 0.48 +0.4
155,922 - GFF3329 0.48 +0.3
156,399 - GFF3329 0.75 -0.5
156,399 - GFF3329 0.75 -0.5
156,399 - GFF3329 0.75 +0.0
156,677 + GFF3329 0.90 -0.6
156,677 + GFF3329 0.90 -0.6
156,741 - +0.5
156,755 + -0.9
156,755 + -0.8
156,756 - -0.7
156,756 - -0.2
156,756 - -0.3
156,756 - +0.4
156,756 - +1.1
156,756 - +0.2
156,756 - -0.7
157,003 + GFF3330 0.19 +0.1
157,003 + GFF3330 0.19 +0.8
157,003 + GFF3330 0.19 +0.4
157,003 + GFF3330 0.19 +0.0
157,003 + GFF3330 0.19 -0.3
157,003 + GFF3330 0.19 +0.4
157,004 - GFF3330 0.19 +0.2
157,004 - GFF3330 0.19 +2.2
157,004 - GFF3330 0.19 -0.5
157,004 - GFF3330 0.19 -0.3
157,382 - GFF3330 0.67 +0.3
157,393 + GFF3330 0.69 +0.2
157,393 + GFF3330 0.69 +0.2
157,797 + -0.1
157,798 - +0.1
157,798 - +1.4
157,971 + GFF3331 0.29 -0.4
157,971 + GFF3331 0.29 -0.7
157,971 + GFF3331 0.29 -0.4
157,971 + GFF3331 0.29 -0.7
157,971 + GFF3331 0.29 +0.2
157,971 + GFF3331 0.29 +1.0
157,971 + GFF3331 0.29 -0.1
157,971 + GFF3331 0.29 -0.4
157,972 - GFF3331 0.29 +0.1
157,972 - GFF3331 0.29 -1.8
157,972 - GFF3331 0.29 -0.1
157,972 - GFF3331 0.29 -1.5
157,972 - GFF3331 0.29 -0.3
157,972 - GFF3331 0.29 -0.1
158,190 + GFF3331 0.65 -0.3
158,190 + GFF3331 0.65 -0.1
158,190 + GFF3331 0.65 +0.4
158,190 + GFF3331 0.65 +0.4
158,190 + GFF3331 0.65 +0.8
158,190 + GFF3331 0.65 -2.0
158,190 + GFF3331 0.65 +0.1
158,191 - GFF3331 0.65 +0.5
158,191 - GFF3331 0.65 -0.0
158,191 - GFF3331 0.65 +0.4
158,191 - GFF3331 0.65 -0.1
158,191 - GFF3331 0.65 +1.2
158,191 - GFF3331 0.65 -0.1
158,191 - GFF3331 0.65 -0.8
158,254 - GFF3331 0.75 -1.4
158,254 - GFF3331 0.75 +0.2
158,254 - GFF3331 0.75 -0.8
158,254 - GFF3331 0.75 -0.2
158,274 + GFF3331 0.78 -1.4
158,274 + GFF3331 0.78 -0.1
158,274 + GFF3331 0.78 -0.5
158,275 - GFF3331 0.79 -0.3
158,275 - GFF3331 0.79 -0.9
158,275 - GFF3331 0.79 +1.9
158,278 - GFF3331 0.79 -0.6
158,391 + -0.6
158,391 + +0.1
158,392 - -0.8
158,392 - -1.8
158,394 + +0.9
158,394 + +1.9
158,394 + -2.0
158,394 + -0.0
158,394 + +0.2
158,394 + -0.4
158,394 + -0.8
158,394 + +0.2
158,394 + +0.3
158,394 + +0.8
158,394 + -1.2
158,395 - -1.9
158,395 - +0.3
158,395 - +0.0
158,395 - -0.4
158,395 - -0.6
158,395 - -0.1
158,395 - -0.4
158,395 - +0.1
158,395 - +0.2
158,395 - +0.2
158,395 - +0.1
158,395 - -0.4
158,412 - -0.0
158,412 - -0.8
158,412 - +0.1
158,464 + +0.9
158,464 + -0.2
158,496 - +0.1
158,496 - -0.4
158,543 + -0.6
158,543 + +0.1
158,543 + +0.0
158,543 + -0.4
158,544 - -0.1
158,544 - -1.6
158,544 - -1.4
158,544 - -0.3
158,598 + -0.6
158,598 + -1.2
158,599 - +0.8

Or see this region's nucleotide sequence