Strain Fitness in Variovorax sp. SCN45 around GFF3313

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
139,374	+		GFF3312	0.47	+1.4
139,374	+		GFF3312	0.47	-0.2
139,375	-		GFF3312	0.47	-0.5
139,375	-		GFF3312	0.47	-0.2
139,375	-		GFF3312	0.47	-0.1
139,386	+		GFF3312	0.47	-0.3
139,386	+		GFF3312	0.47	-0.3
139,386	+		GFF3312	0.47	-0.3
139,386	+		GFF3312	0.47	+0.2
139,387	-		GFF3312	0.47	-1.3
139,387	-		GFF3312	0.47	-0.9
139,387	-		GFF3312	0.47	+0.5
139,387	-		GFF3312	0.47	-1.1
139,387	-		GFF3312	0.47	-0.8
139,504	-		GFF3312	0.56	-0.8
139,688	+		GFF3312	0.68	+0.3
139,704	+		GFF3312	0.69	+0.4
139,704	+		GFF3312	0.69	-2.5
139,704	+		GFF3312	0.69	+0.1
139,704	+		GFF3312	0.69	-0.1
139,704	+		GFF3312	0.69	+0.9
139,704	+		GFF3312	0.69	-0.4
139,704	+		GFF3312	0.69	-2.0
139,704	+		GFF3312	0.69	-0.6
139,704	+		GFF3312	0.69	-0.3
139,704	+		GFF3312	0.69	+1.6
139,704	+		GFF3312	0.69	-0.9
139,704	+		GFF3312	0.69	+0.6
139,704	+		GFF3312	0.69	+0.4
139,704	+		GFF3312	0.69	+0.2
139,704	+		GFF3312	0.69	-0.7
139,704	+		GFF3312	0.69	-1.2
139,704	+		GFF3312	0.69	+0.8
139,705	-		GFF3312	0.69	-0.2
139,705	-		GFF3312	0.69	-0.1
139,705	-		GFF3312	0.69	-0.1
139,705	-		GFF3312	0.69	-0.0
139,705	-		GFF3312	0.69	-0.6
139,705	-		GFF3312	0.69	-0.1
139,705	-		GFF3312	0.69	+0.1
139,705	-		GFF3312	0.69	-1.2
139,705	-		GFF3312	0.69	-0.7
139,705	-		GFF3312	0.69	-0.1
139,705	-		GFF3312	0.69	-0.5
139,758	+		GFF3312	0.73	-0.2
139,800	+		GFF3312	0.76	-0.4
139,800	+		GFF3312	0.76	-1.6
139,800	+		GFF3312	0.76	-0.8
139,863	+		GFF3312	0.80	-0.2
139,863	+		GFF3312	0.80	+0.7
139,863	+		GFF3312	0.80	+0.5
139,863	+		GFF3312	0.80	+1.3
139,863	+		GFF3312	0.80	+0.2
139,863	+		GFF3312	0.80	-0.8
139,863	+		GFF3312	0.80	-0.5
139,864	-		GFF3312	0.80	-0.4
139,864	-		GFF3312	0.80	-0.3
139,864	-		GFF3312	0.80	-0.0
139,864	-		GFF3312	0.80	-0.1
139,864	-		GFF3312	0.80	-0.1
139,864	-		GFF3312	0.80	+1.5
139,864	-		GFF3312	0.80	+0.0
139,864	-		GFF3312	0.80	-0.3
139,864	-		GFF3312	0.80	-1.4
139,864	-		GFF3312	0.80	-0.4
139,864	-		GFF3312	0.80	-2.6
139,864	-		GFF3312	0.80	-0.1
139,899	+		GFF3312	0.83	+0.3
139,899	+		GFF3312	0.83	+0.1
139,899	+		GFF3312	0.83	+0.2
139,899	+		GFF3312	0.83	-0.9
139,899	+		GFF3312	0.83	+0.3
139,899	+		GFF3312	0.83	-0.2
139,899	+		GFF3312	0.83	-0.7
139,899	+		GFF3312	0.83	-0.1
139,899	+		GFF3312	0.83	+1.2
139,899	+		GFF3312	0.83	+0.2
139,900	-		GFF3312	0.83	+0.1
139,900	-		GFF3312	0.83	-0.2
139,900	-		GFF3312	0.83	-0.5
139,900	-		GFF3312	0.83	-0.1
139,900	-		GFF3312	0.83	-0.0
139,900	-		GFF3312	0.83	-0.9
139,900	-		GFF3312	0.83	-0.7
139,900	-		GFF3312	0.83	-0.6
139,900	-		GFF3312	0.83	-1.8
139,900	-		GFF3312	0.83	+0.9
139,900	-		GFF3312	0.83	-0.0
139,900	-		GFF3312	0.83	+0.2
139,900	-		GFF3312	0.83	-0.5
139,900	-		GFF3312	0.83	-0.1
139,926	+		GFF3312	0.85	+0.2
139,926	+		GFF3312	0.85	-0.1
139,927	-		GFF3312	0.85	+0.5
140,080	-				+0.0
140,106	+				-0.3
140,106	+				-0.1
140,106	+				+0.3
140,106	+				+1.2
140,106	+				-1.0
140,107	-				-0.1
140,107	-				-0.7
140,107	-				-0.4
140,107	-				-0.5
140,107	-				-0.2
140,129	+				-0.6
140,129	+				-0.5
140,129	+				-0.8
140,130	-				-0.9
140,130	-				-0.8
140,130	-				+0.5
140,130	-				-0.2
140,130	-				-0.2
140,130	-				+0.5
140,130	-				-0.4
140,130	-				-0.6
140,130	-				-2.3
140,183	+				-2.3
140,184	-				+0.1
140,184	-				+0.9
140,375	+		GFF3313	0.29	+0.4
140,376	-		GFF3313	0.29	-0.3
140,408	+		GFF3313	0.33	+0.3
140,409	-		GFF3313	0.33	-1.2
140,411	+		GFF3313	0.33	-0.1
140,412	-		GFF3313	0.33	-1.0
140,412	-		GFF3313	0.33	-0.2
140,412	-		GFF3313	0.33	-0.7
140,412	-		GFF3313	0.33	-0.1
140,503	+		GFF3313	0.45	-1.0
140,621	+		GFF3313	0.60	-1.1
140,621	+		GFF3313	0.60	-0.4
140,621	+		GFF3313	0.60	+0.1
140,621	+		GFF3313	0.60	-0.4
140,621	+		GFF3313	0.60	+0.4
140,621	+		GFF3313	0.60	-0.9
140,621	+		GFF3313	0.60	-0.3
140,621	+		GFF3313	0.60	-0.1
140,622	-		GFF3313	0.60	+0.2
140,622	-		GFF3313	0.60	-0.9
140,622	-		GFF3313	0.60	+0.5
140,622	-		GFF3313	0.60	-2.1
140,622	-		GFF3313	0.60	+1.9
140,622	-		GFF3313	0.60	-0.1
140,622	-		GFF3313	0.60	-0.4
140,622	-		GFF3313	0.60	-1.2
140,622	-		GFF3313	0.60	-0.6
140,622	-		GFF3313	0.60	+0.5
140,622	-		GFF3313	0.60	-0.6
140,622	-		GFF3313	0.60	-0.2
140,622	-		GFF3313	0.60	+0.6
140,622	-		GFF3313	0.60	+0.4
140,622	-		GFF3313	0.60	-0.3
140,659	+		GFF3313	0.65	-0.5
140,659	+		GFF3313	0.65	+0.5
140,659	+		GFF3313	0.65	+0.8
140,659	+		GFF3313	0.65	-0.5
140,659	+		GFF3313	0.65	-0.1
140,660	-		GFF3313	0.65	+0.1
140,660	-		GFF3313	0.65	+0.7
140,660	-		GFF3313	0.65	+0.4
140,660	-		GFF3313	0.65	-0.9
140,660	-		GFF3313	0.65	-0.1
140,876	+				+0.2
140,876	+				+0.2
140,876	+				+0.9
140,876	+				-0.6
140,876	+				-0.2
140,876	+				-0.7
140,876	+				+0.4
140,876	+				-0.2
140,876	+				+0.6
140,876	+				-0.4
140,876	+				-0.6
140,876	+				-0.6
140,876	+				-1.4
140,876	+				+0.1
140,876	+				+1.0
140,876	+				+0.0
140,876	+				-0.6
140,876	+				-0.3
140,876	+				-0.2
140,877	-				+0.9
140,877	-				+0.1
140,877	-				+0.3
140,877	-				-1.7
140,877	-				-0.9
140,877	-				-0.3
140,877	-				+0.2
140,877	-				-0.7
140,877	-				-0.5
140,877	-				-0.3
140,877	-				-0.5
140,877	-				-1.3
140,877	-				-0.4
140,877	-				+0.4
140,877	-				-0.2
140,877	-				-0.7
140,877	-				-0.4
140,877	-				-0.4
140,877	-				-0.6
140,877	-				-0.7
140,877	-				-0.6
140,877	-				+0.3
140,877	-				-0.9
140,877	-				-0.5
140,877	-				+0.5
140,877	-				+0.2
141,058	+				+0.1
141,062	+				+0.0
141,063	-				+0.8
141,063	-				-1.5
141,063	-				-0.3
141,063	-				-0.5
141,063	-				+0.2
141,063	-				-0.4
141,071	+				-0.1
141,072	-				-0.9
141,080	+				-0.7
141,080	+				-1.2
141,080	+				+0.1
141,080	+				-0.6
141,080	+				+1.2
141,080	+				+0.2
141,081	-				+0.1
141,081	-				-1.1
141,081	-				-0.1
141,081	-				-1.0
141,081	-				-0.6
141,081	-				-0.1
141,081	-				-1.4
141,081	-				+0.5
141,081	-				-0.1
141,083	+				+0.9
141,083	+				-0.4
141,083	+				-0.3
141,083	+				+0.2
141,084	-				-0.6
141,084	-				-0.1
141,084	-				-0.2
141,084	-				-0.3
141,085	-				-0.2
141,086	+				+0.9
141,086	+				+1.0
141,086	+				-0.1
141,086	+				+0.8
141,086	+				-0.4
141,086	+				+1.5
141,086	+				+0.7
141,086	+				+0.3
141,086	+				+0.5
141,087	-				-0.6
141,087	-				+0.2
141,087	-				-0.9
141,087	-				-1.6
141,087	-				-0.3
141,089	+				-1.8
141,089	+				-0.1
141,089	+				-0.5
141,089	+				-0.5
141,089	+				+0.9
141,089	+				-0.6
141,089	+				-0.7
141,089	+				-0.2
141,089	+				+1.9
141,089	+				-0.1
141,089	+				-2.1
141,089	+				+0.9
141,090	-				+0.1
141,090	-				-0.8
141,090	-				-0.6
141,090	-				+1.9
141,090	-				-0.4
141,090	-				-0.4
141,090	-				+1.7
141,090	-				-0.2
141,090	-				+0.5
141,093	+				-0.6
141,093	+				-0.8
141,093	+				-0.5
141,093	+				+0.1
141,094	-				-0.5
141,094	-				-0.2
141,094	-				-0.4
141,094	-				-0.3
141,094	-				+0.6
141,094	-				+0.0
141,094	-				-0.7
141,094	-				+0.7
141,094	-				+0.0
141,094	-				-0.6
141,094	-				-0.1
141,096	-				-0.4
141,134	-				+1.6
141,171	+				-1.1
141,172	-				+1.7
141,190	+				-0.6
141,190	+				+0.7
141,190	+				+0.4
141,190	+				+0.2
141,191	-				+0.7
141,191	-				+0.2
141,324	+				-0.4
141,324	+				+1.7
141,324	+				-0.4
141,325	-				+0.4
141,325	-				-0.6
141,325	-				-0.8
141,325	-				-0.4
141,325	-				-0.2
141,351	+				-1.5
141,364	+				+0.6
141,364	+				-0.8
141,364	+				-0.1
141,365	-				+0.9
141,388	+				-0.1
141,389	-				-0.1
141,389	-				+0.7
141,392	+				+0.0
141,392	+				-0.3
141,392	+				+1.6
141,392	+				-1.5
141,393	-				+1.4
141,393	-				-0.1
141,393	-				-0.4
141,393	-				-0.4
141,393	-				-0.1
141,393	-				-0.1
141,407	+				+1.8
141,510	+				+0.8
141,511	-				-0.2
141,511	-				-0.1
141,665	+		GFF3314	0.15	-0.1
141,665	+		GFF3314	0.15	-0.9
141,665	+		GFF3314	0.15	-1.4
141,665	+		GFF3314	0.15	-0.7
141,665	+		GFF3314	0.15	-0.0
141,665	+		GFF3314	0.15	+0.0
141,666	-		GFF3314	0.15	-0.7
141,666	-		GFF3314	0.15	-0.8
141,666	-		GFF3314	0.15	-0.0
141,666	-		GFF3314	0.15	-0.3
141,746	+		GFF3314	0.24	-0.2
141,746	+		GFF3314	0.24	-0.4
141,747	-		GFF3314	0.24	-0.8