Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2909 and GFF2910 are separated by 51 nucleotides GFF2910 and GFF2911 are separated by 111 nucleotides
GFF2909 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41), at 336,936 to 337,847
GFF2909
GFF2910 - BUG/TctC family periplasmic protein, at 337,899 to 338,897
GFF2910
GFF2911 - Predicted D-glucarate or D-galactorate regulator, GntR family, at 339,009 to 339,893
GFF2911
Position (kb) 337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 337.103 kb on - strand, within GFF2909 at 337.168 kb on + strand, within GFF2909 at 337.168 kb on + strand, within GFF2909 at 337.168 kb on + strand, within GFF2909 at 337.169 kb on - strand, within GFF2909 at 337.169 kb on - strand, within GFF2909 at 337.217 kb on - strand, within GFF2909 at 337.241 kb on - strand, within GFF2909 at 337.241 kb on - strand, within GFF2909 at 337.252 kb on + strand, within GFF2909 at 337.252 kb on + strand, within GFF2909 at 337.252 kb on + strand, within GFF2909 at 337.253 kb on - strand, within GFF2909 at 337.253 kb on - strand, within GFF2909 at 337.283 kb on - strand, within GFF2909 at 337.309 kb on + strand, within GFF2909 at 337.426 kb on + strand, within GFF2909 at 337.427 kb on - strand, within GFF2909 at 337.507 kb on + strand, within GFF2909 at 337.507 kb on + strand, within GFF2909 at 337.508 kb on - strand, within GFF2909 at 337.508 kb on - strand, within GFF2909 at 337.508 kb on - strand, within GFF2909 at 337.750 kb on + strand, within GFF2909 at 337.750 kb on + strand, within GFF2909 at 337.751 kb on - strand, within GFF2909 at 337.751 kb on - strand, within GFF2909 at 338.242 kb on + strand, within GFF2910 at 338.320 kb on + strand, within GFF2910 at 338.320 kb on + strand, within GFF2910 at 338.321 kb on - strand, within GFF2910 at 338.321 kb on - strand, within GFF2910 at 338.329 kb on + strand, within GFF2910 at 338.329 kb on + strand, within GFF2910 at 338.329 kb on + strand, within GFF2910 at 338.329 kb on + strand, within GFF2910 at 338.330 kb on - strand, within GFF2910 at 338.330 kb on - strand, within GFF2910 at 338.330 kb on - strand, within GFF2910 at 338.330 kb on - strand, within GFF2910 at 338.497 kb on + strand, within GFF2910 at 338.497 kb on + strand, within GFF2910 at 338.497 kb on + strand, within GFF2910 at 338.555 kb on - strand, within GFF2910 at 338.605 kb on + strand, within GFF2910 at 338.605 kb on + strand, within GFF2910 at 338.605 kb on + strand, within GFF2910 at 338.606 kb on - strand, within GFF2910 at 338.606 kb on - strand, within GFF2910 at 339.193 kb on + strand, within GFF2911 at 339.229 kb on + strand, within GFF2911 at 339.229 kb on + strand, within GFF2911 at 339.230 kb on - strand, within GFF2911 at 339.230 kb on - strand, within GFF2911 at 339.323 kb on - strand, within GFF2911 at 339.323 kb on - strand, within GFF2911 at 339.453 kb on - strand, within GFF2911 at 339.676 kb on + strand, within GFF2911 at 339.677 kb on - strand, within GFF2911 at 339.677 kb on - strand, within GFF2911 at 339.677 kb on - strand, within GFF2911 at 339.872 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 337,103 - GFF2909 0.18 +0.2 337,168 + GFF2909 0.25 +0.6 337,168 + GFF2909 0.25 -0.3 337,168 + GFF2909 0.25 +0.8 337,169 - GFF2909 0.26 -0.8 337,169 - GFF2909 0.26 -0.2 337,217 - GFF2909 0.31 +0.4 337,241 - GFF2909 0.33 +1.6 337,241 - GFF2909 0.33 -0.1 337,252 + GFF2909 0.35 +0.4 337,252 + GFF2909 0.35 +2.4 337,252 + GFF2909 0.35 +0.5 337,253 - GFF2909 0.35 -1.1 337,253 - GFF2909 0.35 -1.2 337,283 - GFF2909 0.38 +1.6 337,309 + GFF2909 0.41 -0.5 337,426 + GFF2909 0.54 -0.7 337,427 - GFF2909 0.54 -1.0 337,507 + GFF2909 0.63 +0.0 337,507 + GFF2909 0.63 -0.1 337,508 - GFF2909 0.63 +1.3 337,508 - GFF2909 0.63 +0.2 337,508 - GFF2909 0.63 +0.1 337,750 + GFF2909 0.89 -0.8 337,750 + GFF2909 0.89 +0.1 337,751 - GFF2909 0.89 +0.8 337,751 - GFF2909 0.89 +0.0 338,242 + GFF2910 0.34 +0.1 338,320 + GFF2910 0.42 +1.3 338,320 + GFF2910 0.42 -0.7 338,321 - GFF2910 0.42 -1.2 338,321 - GFF2910 0.42 -1.2 338,329 + GFF2910 0.43 +0.4 338,329 + GFF2910 0.43 +0.6 338,329 + GFF2910 0.43 -0.9 338,329 + GFF2910 0.43 -0.0 338,330 - GFF2910 0.43 +0.4 338,330 - GFF2910 0.43 -1.8 338,330 - GFF2910 0.43 -0.5 338,330 - GFF2910 0.43 -0.2 338,497 + GFF2910 0.60 -1.6 338,497 + GFF2910 0.60 -0.2 338,497 + GFF2910 0.60 +0.1 338,555 - GFF2910 0.66 -0.3 338,605 + GFF2910 0.71 -1.4 338,605 + GFF2910 0.71 -1.0 338,605 + GFF2910 0.71 -0.0 338,606 - GFF2910 0.71 +0.1 338,606 - GFF2910 0.71 -0.2 339,193 + GFF2911 0.21 +0.0 339,229 + GFF2911 0.25 -1.3 339,229 + GFF2911 0.25 -1.0 339,230 - GFF2911 0.25 +0.0 339,230 - GFF2911 0.25 -2.5 339,323 - GFF2911 0.35 -1.2 339,323 - GFF2911 0.35 +0.5 339,453 - GFF2911 0.50 -0.7 339,676 + GFF2911 0.75 -0.3 339,677 - GFF2911 0.75 -1.9 339,677 - GFF2911 0.75 +0.5 339,677 - GFF2911 0.75 -0.1 339,872 + -3.3
Or see this region's nucleotide sequence