Strain Fitness in Variovorax sp. SCN45 around GFF2531

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2530 and GFF2531 are separated by 238 nucleotidesGFF2531 and GFF2532 are separated by 22 nucleotides GFF2530 - ABC transporter, substrate-binding protein PA3836, at 589,567 to 590,511 GFF2530 GFF2531 - Transcriptional regulator, AsnC family, at 590,750 to 591,226 GFF2531 GFF2532 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 591,249 to 593,714 GFF2532 Position (kb) 590 591 592Strain fitness (log2 ratio) -2 -1 0 1 2at 589.754 kb on + strand, within GFF2530at 589.754 kb on + strand, within GFF2530at 589.754 kb on + strand, within GFF2530at 589.755 kb on - strand, within GFF2530at 589.755 kb on - strand, within GFF2530at 589.755 kb on - strand, within GFF2530at 589.755 kb on - strand, within GFF2530at 589.854 kb on - strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 590.041 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.198 kb on + strand, within GFF2530at 590.198 kb on + strand, within GFF2530at 590.199 kb on - strand, within GFF2530at 590.199 kb on - strand, within GFF2530at 590.199 kb on - strand, within GFF2530at 590.199 kb on - strand, within GFF2530at 590.199 kb on - strand, within GFF2530at 590.288 kb on + strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.370 kb on - strand, within GFF2530at 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.659 kb on + strandat 590.660 kb on - strandat 590.660 kb on - strandat 590.660 kb on - strandat 590.660 kb on - strandat 590.660 kb on - strandat 590.660 kb on - strandat 590.667 kb on - strandat 590.667 kb on - strandat 590.679 kb on + strandat 590.680 kb on - strandat 590.680 kb on - strandat 590.918 kb on + strand, within GFF2531at 590.918 kb on + strand, within GFF2531at 590.918 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.081 kb on - strand, within GFF2531at 591.081 kb on - strand, within GFF2531at 591.081 kb on - strand, within GFF2531at 591.081 kb on - strand, within GFF2531at 591.081 kb on - strand, within GFF2531at 591.433 kb on + strandat 591.433 kb on + strandat 591.433 kb on + strandat 591.434 kb on - strandat 591.931 kb on + strand, within GFF2532at 591.931 kb on + strand, within GFF2532at 591.931 kb on + strand, within GFF2532at 591.931 kb on + strand, within GFF2532at 591.931 kb on + strand, within GFF2532at 591.932 kb on - strand, within GFF2532at 591.932 kb on - strand, within GFF2532at 591.981 kb on - strand, within GFF2532at 591.981 kb on - strand, within GFF2532at 591.991 kb on + strand, within GFF2532at 591.992 kb on - strand, within GFF2532at 591.992 kb on - strand, within GFF2532at 591.992 kb on - strand, within GFF2532at 592.065 kb on + strand, within GFF2532at 592.066 kb on - strand, within GFF2532at 592.156 kb on - strand, within GFF2532at 592.183 kb on + strand, within GFF2532at 592.183 kb on + strand, within GFF2532at 592.184 kb on - strand, within GFF2532at 592.184 kb on - strand, within GFF2532at 592.184 kb on - strand, within GFF2532at 592.184 kb on - strand, within GFF2532

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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589,754 + GFF2530 0.20 -1.5
589,754 + GFF2530 0.20 -0.0
589,754 + GFF2530 0.20 +0.0
589,755 - GFF2530 0.20 -0.6
589,755 - GFF2530 0.20 -0.7
589,755 - GFF2530 0.20 +0.4
589,755 - GFF2530 0.20 +1.0
589,854 - GFF2530 0.30 -1.3
589,889 + GFF2530 0.34 -1.4
589,889 + GFF2530 0.34 +0.1
589,889 + GFF2530 0.34 +0.1
589,889 + GFF2530 0.34 +0.1
589,889 + GFF2530 0.34 -0.8
589,889 + GFF2530 0.34 +1.3
589,890 - GFF2530 0.34 +0.0
589,890 - GFF2530 0.34 +1.2
589,890 - GFF2530 0.34 -1.2
589,890 - GFF2530 0.34 -0.5
589,890 - GFF2530 0.34 -0.4
589,890 - GFF2530 0.34 -0.0
590,041 + GFF2530 0.50 +0.0
590,042 + GFF2530 0.50 -0.6
590,042 + GFF2530 0.50 -0.5
590,042 + GFF2530 0.50 -0.2
590,042 + GFF2530 0.50 -0.5
590,042 + GFF2530 0.50 -0.4
590,042 + GFF2530 0.50 +0.7
590,042 + GFF2530 0.50 -1.4
590,043 - GFF2530 0.50 +0.1
590,043 - GFF2530 0.50 +0.3
590,043 - GFF2530 0.50 -0.1
590,043 - GFF2530 0.50 -0.1
590,043 - GFF2530 0.50 -2.1
590,043 - GFF2530 0.50 -0.2
590,043 - GFF2530 0.50 -0.7
590,043 - GFF2530 0.50 +0.1
590,043 - GFF2530 0.50 -0.7
590,043 - GFF2530 0.50 -0.5
590,043 - GFF2530 0.50 -0.3
590,043 - GFF2530 0.50 -0.8
590,198 + GFF2530 0.67 +1.7
590,198 + GFF2530 0.67 +1.7
590,199 - GFF2530 0.67 -0.5
590,199 - GFF2530 0.67 +0.0
590,199 - GFF2530 0.67 -0.1
590,199 - GFF2530 0.67 +0.4
590,199 - GFF2530 0.67 +0.6
590,288 + GFF2530 0.76 +1.0
590,289 - GFF2530 0.76 +0.5
590,289 - GFF2530 0.76 -0.2
590,289 - GFF2530 0.76 -0.1
590,289 - GFF2530 0.76 -1.6
590,289 - GFF2530 0.76 -0.1
590,289 - GFF2530 0.76 +0.3
590,289 - GFF2530 0.76 +0.9
590,289 - GFF2530 0.76 +0.2
590,289 - GFF2530 0.76 -0.5
590,339 + GFF2530 0.82 -0.6
590,339 + GFF2530 0.82 +0.3
590,339 + GFF2530 0.82 +0.2
590,339 + GFF2530 0.82 -0.1
590,339 + GFF2530 0.82 +1.1
590,339 + GFF2530 0.82 -1.7
590,339 + GFF2530 0.82 -0.4
590,339 + GFF2530 0.82 -0.8
590,340 - GFF2530 0.82 +1.0
590,340 - GFF2530 0.82 +0.7
590,340 - GFF2530 0.82 -0.2
590,340 - GFF2530 0.82 -0.3
590,340 - GFF2530 0.82 -0.5
590,370 - GFF2530 0.85 -1.0
590,549 + -0.3
590,549 + -0.2
590,549 + +0.0
590,549 + +0.1
590,549 + -0.1
590,549 + +1.2
590,549 + +0.1
590,549 + -0.6
590,549 + -0.8
590,549 + -1.3
590,549 + -0.3
590,549 + -0.2
590,550 - +0.3
590,550 - -0.4
590,550 - -1.4
590,550 - +0.9
590,550 - -0.5
590,550 - -0.7
590,550 - +0.4
590,550 - +0.4
590,550 - +0.4
590,659 + -0.4
590,660 - -1.7
590,660 - -0.7
590,660 - +0.6
590,660 - -0.5
590,660 - -0.6
590,660 - -0.3
590,667 - -2.5
590,667 - -0.3
590,679 + -1.1
590,680 - +0.3
590,680 - +0.5
590,918 + GFF2531 0.35 +0.4
590,918 + GFF2531 0.35 +0.2
590,918 + GFF2531 0.35 -1.0
591,056 + GFF2531 0.64 +0.1
591,056 + GFF2531 0.64 -0.5
591,056 + GFF2531 0.64 -1.1
591,056 + GFF2531 0.64 -0.4
591,056 + GFF2531 0.64 -0.3
591,056 + GFF2531 0.64 -0.2
591,057 - GFF2531 0.64 -0.0
591,057 - GFF2531 0.64 -0.5
591,057 - GFF2531 0.64 -0.7
591,057 - GFF2531 0.64 +0.1
591,057 - GFF2531 0.64 +0.8
591,057 - GFF2531 0.64 +2.1
591,080 + GFF2531 0.69 -1.0
591,080 + GFF2531 0.69 -0.7
591,080 + GFF2531 0.69 -1.3
591,080 + GFF2531 0.69 +0.0
591,080 + GFF2531 0.69 +0.6
591,080 + GFF2531 0.69 +0.2
591,080 + GFF2531 0.69 +1.1
591,080 + GFF2531 0.69 +0.2
591,081 - GFF2531 0.69 -0.3
591,081 - GFF2531 0.69 +0.6
591,081 - GFF2531 0.69 -0.1
591,081 - GFF2531 0.69 +0.3
591,081 - GFF2531 0.69 -0.7
591,433 + +2.7
591,433 + +1.0
591,433 + -1.5
591,434 - -0.7
591,931 + GFF2532 0.28 -0.9
591,931 + GFF2532 0.28 -0.0
591,931 + GFF2532 0.28 +0.4
591,931 + GFF2532 0.28 -0.2
591,931 + GFF2532 0.28 +0.4
591,932 - GFF2532 0.28 +1.0
591,932 - GFF2532 0.28 -2.0
591,981 - GFF2532 0.30 +1.3
591,981 - GFF2532 0.30 -0.2
591,991 + GFF2532 0.30 -0.7
591,992 - GFF2532 0.30 -1.0
591,992 - GFF2532 0.30 +1.4
591,992 - GFF2532 0.30 -0.6
592,065 + GFF2532 0.33 -0.4
592,066 - GFF2532 0.33 +0.2
592,156 - GFF2532 0.37 +0.1
592,183 + GFF2532 0.38 -1.1
592,183 + GFF2532 0.38 +0.9
592,184 - GFF2532 0.38 -0.3
592,184 - GFF2532 0.38 -0.3
592,184 - GFF2532 0.38 -0.6
592,184 - GFF2532 0.38 -0.7

Or see this region's nucleotide sequence