Strain Fitness in Variovorax sp. SCN45 around GFF2529

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2527 and GFF2528 overlap by 1 nucleotidesGFF2528 and GFF2529 overlap by 1 nucleotidesGFF2529 and GFF2530 are separated by 82 nucleotides GFF2527 - GCN5-related N-acetyltransferase, at 587,267 to 587,794 GFF2527 GFF2528 - ABC transporter, ATP-binding protein PA3838, at 587,794 to 588,588 GFF2528 GFF2529 - ABC transporter, permease protein PA3837, at 588,588 to 589,484 GFF2529 GFF2530 - ABC transporter, substrate-binding protein PA3836, at 589,567 to 590,511 GFF2530 Position (kb) 588 589 590Strain fitness (log2 ratio) -2 -1 0 1at 587.604 kb on + strand, within GFF2527at 587.604 kb on + strand, within GFF2527at 587.604 kb on + strand, within GFF2527at 587.604 kb on + strand, within GFF2527at 587.604 kb on + strand, within GFF2527at 587.604 kb on + strand, within GFF2527at 587.604 kb on + strand, within GFF2527at 587.605 kb on - strand, within GFF2527at 587.605 kb on - strand, within GFF2527at 587.605 kb on - strand, within GFF2527at 587.706 kb on + strand, within GFF2527at 587.707 kb on - strand, within GFF2527at 587.707 kb on - strand, within GFF2527at 587.945 kb on + strand, within GFF2528at 587.946 kb on - strand, within GFF2528at 587.946 kb on - strand, within GFF2528at 588.628 kb on + strandat 588.628 kb on + strandat 588.629 kb on - strandat 588.629 kb on - strandat 588.629 kb on - strandat 588.629 kb on - strandat 588.739 kb on + strand, within GFF2529at 588.739 kb on + strand, within GFF2529at 589.189 kb on + strand, within GFF2529at 589.189 kb on + strand, within GFF2529at 589.189 kb on + strand, within GFF2529at 589.189 kb on + strand, within GFF2529at 589.189 kb on + strand, within GFF2529at 589.189 kb on + strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.413 kb on + strandat 589.413 kb on + strandat 589.413 kb on + strandat 589.413 kb on + strandat 589.413 kb on + strandat 589.413 kb on + strandat 589.413 kb on + strandat 589.413 kb on + strandat 589.413 kb on + strandat 589.414 kb on - strandat 589.414 kb on - strandat 589.414 kb on - strandat 589.414 kb on - strandat 589.414 kb on - strandat 589.440 kb on + strandat 589.441 kb on - strandat 589.568 kb on + strandat 589.568 kb on + strandat 589.568 kb on + strandat 589.568 kb on + strandat 589.568 kb on + strandat 589.569 kb on - strandat 589.569 kb on - strandat 589.569 kb on - strandat 589.569 kb on - strandat 589.754 kb on + strand, within GFF2530at 589.754 kb on + strand, within GFF2530at 589.754 kb on + strand, within GFF2530at 589.755 kb on - strand, within GFF2530at 589.755 kb on - strand, within GFF2530at 589.755 kb on - strand, within GFF2530at 589.755 kb on - strand, within GFF2530at 589.854 kb on - strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 590.041 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.198 kb on + strand, within GFF2530at 590.198 kb on + strand, within GFF2530at 590.199 kb on - strand, within GFF2530at 590.199 kb on - strand, within GFF2530at 590.199 kb on - strand, within GFF2530at 590.199 kb on - strand, within GFF2530at 590.199 kb on - strand, within GFF2530at 590.288 kb on + strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.370 kb on - strand, within GFF2530

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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587,604 + GFF2527 0.64 -0.4
587,604 + GFF2527 0.64 +0.3
587,604 + GFF2527 0.64 -0.4
587,604 + GFF2527 0.64 -1.0
587,604 + GFF2527 0.64 -0.3
587,604 + GFF2527 0.64 +0.2
587,604 + GFF2527 0.64 +0.4
587,605 - GFF2527 0.64 -0.1
587,605 - GFF2527 0.64 +0.0
587,605 - GFF2527 0.64 -0.0
587,706 + GFF2527 0.83 -0.3
587,707 - GFF2527 0.83 -0.1
587,707 - GFF2527 0.83 -0.9
587,945 + GFF2528 0.19 -0.0
587,946 - GFF2528 0.19 +0.0
587,946 - GFF2528 0.19 +0.7
588,628 + -0.6
588,628 + -0.3
588,629 - -0.5
588,629 - +0.4
588,629 - -0.7
588,629 - +0.2
588,739 + GFF2529 0.17 +0.5
588,739 + GFF2529 0.17 -0.1
589,189 + GFF2529 0.67 +1.1
589,189 + GFF2529 0.67 -0.7
589,189 + GFF2529 0.67 -1.2
589,189 + GFF2529 0.67 +0.1
589,189 + GFF2529 0.67 +0.5
589,189 + GFF2529 0.67 +0.9
589,190 - GFF2529 0.67 -0.2
589,190 - GFF2529 0.67 -0.0
589,190 - GFF2529 0.67 -0.3
589,190 - GFF2529 0.67 -0.8
589,190 - GFF2529 0.67 -0.7
589,190 - GFF2529 0.67 +1.7
589,190 - GFF2529 0.67 -0.4
589,190 - GFF2529 0.67 -0.0
589,190 - GFF2529 0.67 -0.3
589,413 + +0.6
589,413 + +0.9
589,413 + -0.1
589,413 + -0.6
589,413 + -1.4
589,413 + -0.2
589,413 + -0.6
589,413 + +0.3
589,413 + +1.0
589,414 - -0.5
589,414 - +0.7
589,414 - +0.3
589,414 - -1.0
589,414 - -0.4
589,440 + -0.0
589,441 - -0.8
589,568 + +1.1
589,568 + -0.3
589,568 + +0.2
589,568 + +1.0
589,568 + +0.5
589,569 - -0.6
589,569 - -0.8
589,569 - -0.0
589,569 - -1.5
589,754 + GFF2530 0.20 -1.5
589,754 + GFF2530 0.20 -0.0
589,754 + GFF2530 0.20 +0.0
589,755 - GFF2530 0.20 -0.6
589,755 - GFF2530 0.20 -0.7
589,755 - GFF2530 0.20 +0.4
589,755 - GFF2530 0.20 +1.0
589,854 - GFF2530 0.30 -1.3
589,889 + GFF2530 0.34 -1.4
589,889 + GFF2530 0.34 +0.1
589,889 + GFF2530 0.34 +0.1
589,889 + GFF2530 0.34 +0.1
589,889 + GFF2530 0.34 -0.8
589,889 + GFF2530 0.34 +1.3
589,890 - GFF2530 0.34 +0.0
589,890 - GFF2530 0.34 +1.2
589,890 - GFF2530 0.34 -1.2
589,890 - GFF2530 0.34 -0.5
589,890 - GFF2530 0.34 -0.4
589,890 - GFF2530 0.34 -0.0
590,041 + GFF2530 0.50 +0.0
590,042 + GFF2530 0.50 -0.6
590,042 + GFF2530 0.50 -0.5
590,042 + GFF2530 0.50 -0.2
590,042 + GFF2530 0.50 -0.5
590,042 + GFF2530 0.50 -0.4
590,042 + GFF2530 0.50 +0.7
590,042 + GFF2530 0.50 -1.4
590,043 - GFF2530 0.50 +0.1
590,043 - GFF2530 0.50 +0.3
590,043 - GFF2530 0.50 -0.1
590,043 - GFF2530 0.50 -0.1
590,043 - GFF2530 0.50 -2.1
590,043 - GFF2530 0.50 -0.2
590,043 - GFF2530 0.50 -0.7
590,043 - GFF2530 0.50 +0.1
590,043 - GFF2530 0.50 -0.7
590,043 - GFF2530 0.50 -0.5
590,043 - GFF2530 0.50 -0.3
590,043 - GFF2530 0.50 -0.8
590,198 + GFF2530 0.67 +1.7
590,198 + GFF2530 0.67 +1.7
590,199 - GFF2530 0.67 -0.5
590,199 - GFF2530 0.67 +0.0
590,199 - GFF2530 0.67 -0.1
590,199 - GFF2530 0.67 +0.4
590,199 - GFF2530 0.67 +0.6
590,288 + GFF2530 0.76 +1.0
590,289 - GFF2530 0.76 +0.5
590,289 - GFF2530 0.76 -0.2
590,289 - GFF2530 0.76 -0.1
590,289 - GFF2530 0.76 -1.6
590,289 - GFF2530 0.76 -0.1
590,289 - GFF2530 0.76 +0.3
590,289 - GFF2530 0.76 +0.9
590,289 - GFF2530 0.76 +0.2
590,289 - GFF2530 0.76 -0.5
590,339 + GFF2530 0.82 -0.6
590,339 + GFF2530 0.82 +0.3
590,339 + GFF2530 0.82 +0.2
590,339 + GFF2530 0.82 -0.1
590,339 + GFF2530 0.82 +1.1
590,339 + GFF2530 0.82 -1.7
590,339 + GFF2530 0.82 -0.4
590,339 + GFF2530 0.82 -0.8
590,340 - GFF2530 0.82 +1.0
590,340 - GFF2530 0.82 +0.7
590,340 - GFF2530 0.82 -0.2
590,340 - GFF2530 0.82 -0.3
590,340 - GFF2530 0.82 -0.5
590,370 - GFF2530 0.85 -1.0

Or see this region's nucleotide sequence