Strain Fitness in Variovorax sp. SCN45 around GFF2438

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2436 and GFF2437 are separated by 48 nucleotidesGFF2437 and GFF2438 are separated by 16 nucleotidesGFF2438 and GFF2439 are separated by 104 nucleotides GFF2436 - no description, at 487,258 to 487,620 GFF2436 GFF2437 - hypothetical protein, at 487,669 to 488,322 GFF2437 GFF2438 - Ferrichrome-iron receptor, at 488,339 to 490,795 GFF2438 GFF2439 - no description, at 490,900 to 491,910 GFF2439 Position (kb) 488 489 490 491Strain fitness (log2 ratio) -2 -1 0 1 2 3at 487.459 kb on - strand, within GFF2436at 487.459 kb on - strand, within GFF2436at 487.529 kb on - strand, within GFF2436at 487.753 kb on + strand, within GFF2437at 487.753 kb on + strand, within GFF2437at 487.754 kb on - strand, within GFF2437at 487.987 kb on + strand, within GFF2437at 487.988 kb on - strand, within GFF2437at 488.200 kb on + strand, within GFF2437at 488.200 kb on + strand, within GFF2437at 488.200 kb on + strand, within GFF2437at 488.201 kb on - strand, within GFF2437at 488.257 kb on + strandat 488.341 kb on - strandat 488.349 kb on + strandat 488.349 kb on + strandat 488.349 kb on + strandat 488.350 kb on - strandat 488.385 kb on + strandat 488.385 kb on + strandat 488.388 kb on + strandat 488.389 kb on - strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.419 kb on - strandat 488.419 kb on - strandat 488.419 kb on - strandat 488.419 kb on - strandat 488.419 kb on - strandat 488.419 kb on - strandat 488.419 kb on - strandat 488.502 kb on + strandat 488.502 kb on + strandat 488.503 kb on - strandat 488.535 kb on + strandat 488.697 kb on + strand, within GFF2438at 488.697 kb on + strand, within GFF2438at 488.698 kb on - strand, within GFF2438at 488.808 kb on + strand, within GFF2438at 488.808 kb on + strand, within GFF2438at 488.809 kb on - strand, within GFF2438at 488.817 kb on + strand, within GFF2438at 488.817 kb on + strand, within GFF2438at 488.817 kb on + strand, within GFF2438at 488.817 kb on + strand, within GFF2438at 488.817 kb on + strand, within GFF2438at 488.817 kb on + strand, within GFF2438at 488.817 kb on + strand, within GFF2438at 488.818 kb on - strand, within GFF2438at 488.818 kb on - strand, within GFF2438at 488.818 kb on - strand, within GFF2438at 488.818 kb on - strand, within GFF2438at 488.818 kb on - strand, within GFF2438at 488.818 kb on - strand, within GFF2438at 488.818 kb on - strand, within GFF2438at 488.853 kb on + strand, within GFF2438at 488.853 kb on + strand, within GFF2438at 488.853 kb on + strand, within GFF2438at 488.853 kb on + strand, within GFF2438at 488.853 kb on + strand, within GFF2438at 488.853 kb on + strand, within GFF2438at 488.853 kb on + strand, within GFF2438at 488.854 kb on - strand, within GFF2438at 488.854 kb on - strand, within GFF2438at 488.854 kb on - strand, within GFF2438at 488.854 kb on - strand, within GFF2438at 488.985 kb on + strand, within GFF2438at 488.985 kb on + strand, within GFF2438at 489.012 kb on + strand, within GFF2438at 489.013 kb on - strand, within GFF2438at 489.081 kb on + strand, within GFF2438at 489.081 kb on + strand, within GFF2438at 489.081 kb on + strand, within GFF2438at 489.081 kb on + strand, within GFF2438at 489.082 kb on - strand, within GFF2438at 489.106 kb on - strand, within GFF2438at 489.159 kb on + strand, within GFF2438at 489.159 kb on + strand, within GFF2438at 489.159 kb on + strand, within GFF2438at 489.159 kb on + strand, within GFF2438at 489.159 kb on + strand, within GFF2438at 489.159 kb on + strand, within GFF2438at 489.159 kb on + strand, within GFF2438at 489.160 kb on - strand, within GFF2438at 489.160 kb on - strand, within GFF2438at 489.240 kb on + strand, within GFF2438at 489.429 kb on + strand, within GFF2438at 489.430 kb on - strand, within GFF2438at 489.627 kb on + strand, within GFF2438at 489.627 kb on + strand, within GFF2438at 489.627 kb on + strand, within GFF2438at 489.627 kb on + strand, within GFF2438at 489.627 kb on + strand, within GFF2438at 489.627 kb on + strand, within GFF2438at 489.627 kb on + strand, within GFF2438at 489.627 kb on + strand, within GFF2438at 489.627 kb on + strand, within GFF2438at 489.627 kb on + strand, within GFF2438at 489.628 kb on - strand, within GFF2438at 489.628 kb on - strand, within GFF2438at 489.628 kb on - strand, within GFF2438at 489.628 kb on - strand, within GFF2438at 490.053 kb on + strand, within GFF2438at 490.054 kb on - strand, within GFF2438at 490.054 kb on - strand, within GFF2438at 490.113 kb on + strand, within GFF2438at 490.113 kb on + strand, within GFF2438at 490.114 kb on - strand, within GFF2438at 490.116 kb on + strand, within GFF2438at 490.204 kb on + strand, within GFF2438at 490.204 kb on + strand, within GFF2438at 490.205 kb on - strand, within GFF2438at 490.206 kb on + strand, within GFF2438at 490.207 kb on - strand, within GFF2438at 490.207 kb on - strand, within GFF2438at 490.207 kb on - strand, within GFF2438at 490.338 kb on + strand, within GFF2438at 490.339 kb on - strand, within GFF2438at 490.582 kb on - strandat 490.848 kb on + strandat 491.006 kb on + strand, within GFF2439at 491.006 kb on + strand, within GFF2439at 491.006 kb on + strand, within GFF2439at 491.006 kb on + strand, within GFF2439at 491.072 kb on + strand, within GFF2439at 491.072 kb on + strand, within GFF2439at 491.072 kb on + strand, within GFF2439at 491.073 kb on - strand, within GFF2439at 491.314 kb on + strand, within GFF2439at 491.314 kb on + strand, within GFF2439at 491.315 kb on - strand, within GFF2439at 491.444 kb on + strand, within GFF2439at 491.549 kb on + strand, within GFF2439at 491.567 kb on + strand, within GFF2439at 491.567 kb on + strand, within GFF2439

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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487,459 - GFF2436 0.55 -0.1
487,459 - GFF2436 0.55 -0.2
487,529 - GFF2436 0.75 -0.3
487,753 + GFF2437 0.13 -1.7
487,753 + GFF2437 0.13 -1.0
487,754 - GFF2437 0.13 -0.4
487,987 + GFF2437 0.49 +0.4
487,988 - GFF2437 0.49 -2.2
488,200 + GFF2437 0.81 +0.1
488,200 + GFF2437 0.81 -1.3
488,200 + GFF2437 0.81 -0.6
488,201 - GFF2437 0.81 +1.7
488,257 + -1.1
488,341 - +0.5
488,349 + -1.3
488,349 + -0.7
488,349 + +0.2
488,350 - +0.4
488,385 + -0.1
488,385 + -0.1
488,388 + -0.9
488,389 - -1.2
488,418 + +0.5
488,418 + -0.8
488,418 + -0.3
488,418 + -0.6
488,418 + +0.3
488,418 + -1.1
488,418 + -0.4
488,418 + +0.3
488,418 + +0.7
488,418 + +0.1
488,418 + +0.3
488,418 + -2.4
488,418 + +1.7
488,418 + -0.9
488,418 + +0.1
488,418 + -0.4
488,419 - +1.0
488,419 - +0.9
488,419 - -0.6
488,419 - -0.4
488,419 - +0.5
488,419 - -0.6
488,419 - -0.3
488,502 + -2.0
488,502 + -0.8
488,503 - +0.2
488,535 + -0.0
488,697 + GFF2438 0.15 +0.7
488,697 + GFF2438 0.15 +1.9
488,698 - GFF2438 0.15 -1.0
488,808 + GFF2438 0.19 -0.9
488,808 + GFF2438 0.19 +0.7
488,809 - GFF2438 0.19 +0.7
488,817 + GFF2438 0.19 -0.6
488,817 + GFF2438 0.19 +0.1
488,817 + GFF2438 0.19 +0.1
488,817 + GFF2438 0.19 -0.4
488,817 + GFF2438 0.19 -0.4
488,817 + GFF2438 0.19 -0.8
488,817 + GFF2438 0.19 +0.5
488,818 - GFF2438 0.19 -0.6
488,818 - GFF2438 0.19 +1.7
488,818 - GFF2438 0.19 -0.6
488,818 - GFF2438 0.19 -0.3
488,818 - GFF2438 0.19 +0.1
488,818 - GFF2438 0.19 -0.3
488,818 - GFF2438 0.19 +0.4
488,853 + GFF2438 0.21 -1.1
488,853 + GFF2438 0.21 -0.8
488,853 + GFF2438 0.21 -0.4
488,853 + GFF2438 0.21 -0.8
488,853 + GFF2438 0.21 -0.3
488,853 + GFF2438 0.21 -1.6
488,853 + GFF2438 0.21 -0.2
488,854 - GFF2438 0.21 +0.1
488,854 - GFF2438 0.21 +1.1
488,854 - GFF2438 0.21 -0.5
488,854 - GFF2438 0.21 +0.0
488,985 + GFF2438 0.26 -1.7
488,985 + GFF2438 0.26 +0.5
489,012 + GFF2438 0.27 -2.4
489,013 - GFF2438 0.27 -0.6
489,081 + GFF2438 0.30 -1.2
489,081 + GFF2438 0.30 -0.1
489,081 + GFF2438 0.30 +0.3
489,081 + GFF2438 0.30 +0.3
489,082 - GFF2438 0.30 +0.0
489,106 - GFF2438 0.31 -0.9
489,159 + GFF2438 0.33 +0.6
489,159 + GFF2438 0.33 -0.9
489,159 + GFF2438 0.33 -1.0
489,159 + GFF2438 0.33 +0.0
489,159 + GFF2438 0.33 +1.3
489,159 + GFF2438 0.33 -0.6
489,159 + GFF2438 0.33 -2.1
489,160 - GFF2438 0.33 -0.6
489,160 - GFF2438 0.33 +0.2
489,240 + GFF2438 0.37 -1.1
489,429 + GFF2438 0.44 +0.3
489,430 - GFF2438 0.44 -0.2
489,627 + GFF2438 0.52 +0.1
489,627 + GFF2438 0.52 -1.2
489,627 + GFF2438 0.52 -1.0
489,627 + GFF2438 0.52 +0.4
489,627 + GFF2438 0.52 -0.8
489,627 + GFF2438 0.52 -0.3
489,627 + GFF2438 0.52 +0.5
489,627 + GFF2438 0.52 -0.2
489,627 + GFF2438 0.52 +0.5
489,627 + GFF2438 0.52 -0.5
489,628 - GFF2438 0.52 +3.3
489,628 - GFF2438 0.52 -0.5
489,628 - GFF2438 0.52 -1.0
489,628 - GFF2438 0.52 +0.7
490,053 + GFF2438 0.70 -0.2
490,054 - GFF2438 0.70 -0.2
490,054 - GFF2438 0.70 -0.2
490,113 + GFF2438 0.72 -1.4
490,113 + GFF2438 0.72 -0.6
490,114 - GFF2438 0.72 +0.9
490,116 + GFF2438 0.72 -0.9
490,204 + GFF2438 0.76 +1.5
490,204 + GFF2438 0.76 -1.6
490,205 - GFF2438 0.76 +0.7
490,206 + GFF2438 0.76 -0.5
490,207 - GFF2438 0.76 -0.3
490,207 - GFF2438 0.76 -1.0
490,207 - GFF2438 0.76 -0.5
490,338 + GFF2438 0.81 -0.3
490,339 - GFF2438 0.81 -0.6
490,582 - -0.2
490,848 + -0.4
491,006 + GFF2439 0.10 -1.0
491,006 + GFF2439 0.10 +0.6
491,006 + GFF2439 0.10 +0.3
491,006 + GFF2439 0.10 -1.2
491,072 + GFF2439 0.17 -0.4
491,072 + GFF2439 0.17 +0.2
491,072 + GFF2439 0.17 -1.4
491,073 - GFF2439 0.17 -0.2
491,314 + GFF2439 0.41 +0.7
491,314 + GFF2439 0.41 -0.5
491,315 - GFF2439 0.41 -0.9
491,444 + GFF2439 0.54 +1.2
491,549 + GFF2439 0.64 -1.6
491,567 + GFF2439 0.66 +0.4
491,567 + GFF2439 0.66 +0.1

Or see this region's nucleotide sequence