Strain Fitness in Variovorax sp. SCN45 around GFF2432

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2430 and GFF2431 are separated by 158 nucleotidesGFF2431 and GFF2432 overlap by 4 nucleotidesGFF2432 and GFF2433 are separated by 107 nucleotides GFF2430 - Protein secretion chaperonin CsaA, at 480,618 to 480,977 GFF2430 GFF2431 - RNA polymerase ECF-type sigma factor, at 481,136 to 481,663 GFF2431 GFF2432 - Fe2+-dicitrate sensor, membrane component, at 481,660 to 482,652 GFF2432 GFF2433 - Putative OMR family iron-siderophore receptor precursor, at 482,760 to 485,210 GFF2433 Position (kb) 481 482 483Strain fitness (log2 ratio) -2 -1 0 1at 480.790 kb on + strand, within GFF2430at 480.856 kb on + strand, within GFF2430at 480.856 kb on + strand, within GFF2430at 480.856 kb on + strand, within GFF2430at 480.857 kb on - strand, within GFF2430at 480.857 kb on - strand, within GFF2430at 480.857 kb on - strand, within GFF2430at 480.857 kb on - strand, within GFF2430at 480.857 kb on - strand, within GFF2430at 481.015 kb on + strandat 481.015 kb on + strandat 481.015 kb on + strandat 481.015 kb on + strandat 481.016 kb on - strandat 481.016 kb on - strandat 481.082 kb on - strandat 481.181 kb on + strandat 481.181 kb on + strandat 481.182 kb on - strandat 481.182 kb on - strandat 481.182 kb on - strandat 481.182 kb on - strandat 481.182 kb on - strandat 481.182 kb on - strandat 481.343 kb on + strand, within GFF2431at 481.344 kb on - strand, within GFF2431at 481.344 kb on - strand, within GFF2431at 481.383 kb on - strand, within GFF2431at 481.409 kb on + strand, within GFF2431at 481.410 kb on - strand, within GFF2431at 481.568 kb on + strand, within GFF2431at 481.619 kb on + strandat 481.619 kb on + strandat 481.620 kb on - strandat 482.092 kb on + strand, within GFF2432at 482.093 kb on - strand, within GFF2432at 482.609 kb on - strandat 482.621 kb on - strandat 482.917 kb on - strandat 482.917 kb on - strandat 482.917 kb on - strandat 483.039 kb on + strand, within GFF2433at 483.040 kb on - strand, within GFF2433at 483.040 kb on - strand, within GFF2433at 483.040 kb on - strand, within GFF2433at 483.114 kb on + strand, within GFF2433at 483.115 kb on - strand, within GFF2433at 483.234 kb on + strand, within GFF2433at 483.234 kb on + strand, within GFF2433at 483.234 kb on + strand, within GFF2433at 483.234 kb on + strand, within GFF2433at 483.235 kb on - strand, within GFF2433at 483.235 kb on - strand, within GFF2433at 483.235 kb on - strand, within GFF2433at 483.418 kb on - strand, within GFF2433at 483.432 kb on + strand, within GFF2433at 483.444 kb on + strand, within GFF2433at 483.444 kb on + strand, within GFF2433at 483.445 kb on - strand, within GFF2433at 483.445 kb on - strand, within GFF2433at 483.450 kb on + strand, within GFF2433at 483.451 kb on - strand, within GFF2433at 483.516 kb on + strand, within GFF2433at 483.516 kb on + strand, within GFF2433at 483.516 kb on + strand, within GFF2433at 483.516 kb on + strand, within GFF2433at 483.517 kb on - strand, within GFF2433

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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480,790 + GFF2430 0.48 -0.0
480,856 + GFF2430 0.66 -0.2
480,856 + GFF2430 0.66 +0.1
480,856 + GFF2430 0.66 -1.4
480,857 - GFF2430 0.66 +0.0
480,857 - GFF2430 0.66 -0.3
480,857 - GFF2430 0.66 -0.7
480,857 - GFF2430 0.66 -0.8
480,857 - GFF2430 0.66 -0.7
481,015 + +0.3
481,015 + +0.2
481,015 + +0.5
481,015 + -0.0
481,016 - -0.6
481,016 - -0.3
481,082 - -0.0
481,181 + -1.1
481,181 + -0.2
481,182 - -0.6
481,182 - -0.9
481,182 - +0.9
481,182 - -0.1
481,182 - -0.7
481,182 - -0.1
481,343 + GFF2431 0.39 +1.3
481,344 - GFF2431 0.39 +0.3
481,344 - GFF2431 0.39 +1.0
481,383 - GFF2431 0.47 -0.3
481,409 + GFF2431 0.52 +0.7
481,410 - GFF2431 0.52 -1.5
481,568 + GFF2431 0.82 -0.1
481,619 + -0.1
481,619 + -1.3
481,620 - -0.3
482,092 + GFF2432 0.44 -0.1
482,093 - GFF2432 0.44 +1.0
482,609 - +0.3
482,621 - -0.4
482,917 - +0.3
482,917 - +1.0
482,917 - +0.6
483,039 + GFF2433 0.11 -0.8
483,040 - GFF2433 0.11 -1.7
483,040 - GFF2433 0.11 +1.0
483,040 - GFF2433 0.11 -1.9
483,114 + GFF2433 0.14 +0.6
483,115 - GFF2433 0.14 +0.1
483,234 + GFF2433 0.19 -1.0
483,234 + GFF2433 0.19 -1.3
483,234 + GFF2433 0.19 -0.4
483,234 + GFF2433 0.19 -0.3
483,235 - GFF2433 0.19 -0.1
483,235 - GFF2433 0.19 -1.3
483,235 - GFF2433 0.19 +0.1
483,418 - GFF2433 0.27 +0.4
483,432 + GFF2433 0.27 +0.5
483,444 + GFF2433 0.28 -0.1
483,444 + GFF2433 0.28 -0.2
483,445 - GFF2433 0.28 -0.9
483,445 - GFF2433 0.28 +0.3
483,450 + GFF2433 0.28 -0.1
483,451 - GFF2433 0.28 -1.0
483,516 + GFF2433 0.31 -0.4
483,516 + GFF2433 0.31 -0.1
483,516 + GFF2433 0.31 +0.2
483,516 + GFF2433 0.31 +0.1
483,517 - GFF2433 0.31 +0.1

Or see this region's nucleotide sequence