Strain Fitness in Variovorax sp. SCN45 around GFF2360

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2359 and GFF2360 are separated by 141 nucleotidesGFF2360 and GFF2361 are separated by 372 nucleotides GFF2359 - Heat-inducible transcription repressor HrcA, at 410,971 to 411,978 GFF2359 GFF2360 - GGDEF domain protein, at 412,120 to 413,979 GFF2360 GFF2361 - hypothetical protein, at 414,352 to 415,041 GFF2361 Position (kb) 412 413 414Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 411.162 kb on + strand, within GFF2359at 411.162 kb on + strand, within GFF2359at 411.162 kb on + strand, within GFF2359at 411.163 kb on - strand, within GFF2359at 411.163 kb on - strand, within GFF2359at 411.163 kb on - strand, within GFF2359at 411.163 kb on - strand, within GFF2359at 411.452 kb on - strand, within GFF2359at 411.452 kb on - strand, within GFF2359at 411.484 kb on + strand, within GFF2359at 411.484 kb on + strand, within GFF2359at 411.484 kb on + strand, within GFF2359at 411.484 kb on + strand, within GFF2359at 411.484 kb on + strand, within GFF2359at 411.485 kb on - strand, within GFF2359at 411.485 kb on - strand, within GFF2359at 411.485 kb on - strand, within GFF2359at 411.485 kb on - strand, within GFF2359at 411.485 kb on - strand, within GFF2359at 411.485 kb on - strand, within GFF2359at 411.499 kb on + strand, within GFF2359at 411.500 kb on - strand, within GFF2359at 411.500 kb on - strand, within GFF2359at 411.500 kb on - strand, within GFF2359at 411.500 kb on - strand, within GFF2359at 411.847 kb on + strand, within GFF2359at 411.847 kb on + strand, within GFF2359at 411.847 kb on + strand, within GFF2359at 411.847 kb on + strand, within GFF2359at 411.847 kb on + strand, within GFF2359at 411.848 kb on - strand, within GFF2359at 411.848 kb on - strand, within GFF2359at 411.848 kb on - strand, within GFF2359at 411.848 kb on - strand, within GFF2359at 411.908 kb on - strandat 411.977 kb on - strandat 411.977 kb on - strandat 411.995 kb on + strandat 411.995 kb on + strandat 411.995 kb on + strandat 411.995 kb on + strandat 412.101 kb on - strandat 412.101 kb on - strandat 412.238 kb on + strandat 412.238 kb on + strandat 412.238 kb on + strandat 412.238 kb on + strandat 412.238 kb on + strandat 412.238 kb on + strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.886 kb on + strand, within GFF2360at 412.886 kb on + strand, within GFF2360at 412.887 kb on - strand, within GFF2360at 412.904 kb on + strand, within GFF2360at 412.905 kb on - strand, within GFF2360at 412.905 kb on - strand, within GFF2360at 412.905 kb on - strand, within GFF2360at 413.150 kb on + strand, within GFF2360at 413.150 kb on + strand, within GFF2360at 413.151 kb on - strand, within GFF2360at 413.189 kb on + strand, within GFF2360at 413.252 kb on + strand, within GFF2360at 413.252 kb on + strand, within GFF2360at 413.252 kb on + strand, within GFF2360at 413.252 kb on + strand, within GFF2360at 413.252 kb on + strand, within GFF2360at 413.252 kb on + strand, within GFF2360at 413.252 kb on + strand, within GFF2360at 413.252 kb on + strand, within GFF2360at 413.252 kb on + strand, within GFF2360at 413.252 kb on + strand, within GFF2360at 413.252 kb on + strand, within GFF2360at 413.252 kb on + strand, within GFF2360at 413.252 kb on + strand, within GFF2360at 413.253 kb on - strand, within GFF2360at 413.253 kb on - strand, within GFF2360at 413.253 kb on - strand, within GFF2360at 413.253 kb on - strand, within GFF2360at 413.253 kb on - strand, within GFF2360at 413.253 kb on - strand, within GFF2360at 413.253 kb on - strand, within GFF2360at 413.253 kb on - strand, within GFF2360at 413.253 kb on - strand, within GFF2360at 413.253 kb on - strand, within GFF2360at 413.253 kb on - strand, within GFF2360at 413.253 kb on - strand, within GFF2360at 413.253 kb on - strand, within GFF2360at 413.261 kb on + strand, within GFF2360at 413.261 kb on + strand, within GFF2360at 413.261 kb on + strand, within GFF2360at 413.261 kb on + strand, within GFF2360at 413.262 kb on - strand, within GFF2360at 413.262 kb on - strand, within GFF2360at 413.300 kb on + strand, within GFF2360at 413.300 kb on + strand, within GFF2360at 413.300 kb on + strand, within GFF2360at 413.300 kb on + strand, within GFF2360at 413.300 kb on + strand, within GFF2360at 413.300 kb on + strand, within GFF2360at 413.300 kb on + strand, within GFF2360at 413.300 kb on + strand, within GFF2360at 413.300 kb on + strand, within GFF2360at 413.300 kb on + strand, within GFF2360at 413.301 kb on - strand, within GFF2360at 413.301 kb on - strand, within GFF2360at 413.301 kb on - strand, within GFF2360at 413.301 kb on - strand, within GFF2360at 413.327 kb on + strand, within GFF2360at 413.327 kb on + strand, within GFF2360at 413.328 kb on - strand, within GFF2360at 413.328 kb on - strand, within GFF2360at 413.373 kb on - strand, within GFF2360at 413.402 kb on + strand, within GFF2360at 413.402 kb on + strand, within GFF2360at 413.402 kb on + strand, within GFF2360at 413.402 kb on + strand, within GFF2360at 413.402 kb on + strand, within GFF2360at 413.402 kb on + strand, within GFF2360at 413.403 kb on - strand, within GFF2360at 413.403 kb on - strand, within GFF2360at 413.403 kb on - strand, within GFF2360at 413.403 kb on - strand, within GFF2360at 413.403 kb on - strand, within GFF2360at 413.403 kb on - strand, within GFF2360at 413.403 kb on - strand, within GFF2360at 413.403 kb on - strand, within GFF2360at 413.435 kb on + strand, within GFF2360at 413.436 kb on - strand, within GFF2360at 413.436 kb on - strand, within GFF2360at 413.441 kb on + strand, within GFF2360at 413.442 kb on + strand, within GFF2360at 413.442 kb on + strand, within GFF2360at 413.442 kb on + strand, within GFF2360at 413.442 kb on + strand, within GFF2360at 413.442 kb on + strand, within GFF2360at 413.442 kb on + strand, within GFF2360at 413.442 kb on + strand, within GFF2360at 413.443 kb on - strand, within GFF2360at 413.443 kb on - strand, within GFF2360at 413.443 kb on - strand, within GFF2360at 413.443 kb on - strand, within GFF2360at 413.443 kb on - strand, within GFF2360at 413.443 kb on - strand, within GFF2360at 413.443 kb on - strand, within GFF2360at 413.443 kb on - strand, within GFF2360at 413.443 kb on - strand, within GFF2360at 413.443 kb on - strand, within GFF2360at 413.443 kb on - strand, within GFF2360at 413.443 kb on - strand, within GFF2360at 413.443 kb on - strand, within GFF2360at 413.443 kb on - strand, within GFF2360at 413.444 kb on + strand, within GFF2360at 413.444 kb on + strand, within GFF2360at 413.444 kb on + strand, within GFF2360at 413.444 kb on + strand, within GFF2360at 413.444 kb on + strand, within GFF2360at 413.444 kb on + strand, within GFF2360at 413.444 kb on + strand, within GFF2360at 413.444 kb on + strand, within GFF2360at 413.444 kb on + strand, within GFF2360at 413.444 kb on + strand, within GFF2360at 413.444 kb on + strand, within GFF2360at 413.444 kb on + strand, within GFF2360at 413.444 kb on + strand, within GFF2360at 413.444 kb on + strand, within GFF2360at 413.444 kb on + strand, within GFF2360at 413.444 kb on + strand, within GFF2360at 413.445 kb on - strand, within GFF2360at 413.445 kb on - strand, within GFF2360at 413.445 kb on - strand, within GFF2360at 413.445 kb on - strand, within GFF2360at 413.445 kb on - strand, within GFF2360at 413.445 kb on - strand, within GFF2360at 413.445 kb on - strand, within GFF2360at 413.445 kb on - strand, within GFF2360at 413.445 kb on - strand, within GFF2360at 413.445 kb on - strand, within GFF2360at 413.445 kb on - strand, within GFF2360at 413.445 kb on - strand, within GFF2360at 413.445 kb on - strand, within GFF2360at 413.445 kb on - strand, within GFF2360at 413.445 kb on - strand, within GFF2360at 413.445 kb on - strand, within GFF2360at 413.445 kb on - strand, within GFF2360at 413.567 kb on + strand, within GFF2360at 413.567 kb on + strand, within GFF2360at 413.568 kb on - strand, within GFF2360at 413.576 kb on + strand, within GFF2360at 413.576 kb on + strand, within GFF2360at 413.576 kb on + strand, within GFF2360at 413.576 kb on + strand, within GFF2360at 413.577 kb on - strand, within GFF2360at 413.577 kb on - strand, within GFF2360at 413.577 kb on - strand, within GFF2360at 413.577 kb on - strand, within GFF2360at 413.577 kb on - strand, within GFF2360at 413.577 kb on - strand, within GFF2360at 413.833 kb on + strandat 413.833 kb on + strandat 413.833 kb on + strandat 413.834 kb on - strandat 413.834 kb on - strandat 414.105 kb on + strandat 414.105 kb on + strandat 414.105 kb on + strandat 414.106 kb on - strandat 414.106 kb on - strandat 414.106 kb on - strandat 414.106 kb on - strandat 414.106 kb on - strandat 414.118 kb on + strandat 414.123 kb on + strandat 414.123 kb on + strandat 414.123 kb on + strandat 414.123 kb on + strandat 414.123 kb on + strandat 414.124 kb on - strandat 414.124 kb on - strandat 414.124 kb on - strandat 414.124 kb on - strandat 414.124 kb on - strandat 414.124 kb on - strandat 414.124 kb on - strandat 414.124 kb on - strandat 414.126 kb on + strandat 414.126 kb on + strandat 414.126 kb on + strandat 414.126 kb on + strandat 414.126 kb on + strandat 414.126 kb on + strandat 414.126 kb on + strandat 414.126 kb on + strandat 414.127 kb on - strandat 414.127 kb on - strandat 414.127 kb on - strandat 414.127 kb on - strandat 414.127 kb on - strandat 414.127 kb on - strandat 414.127 kb on - strandat 414.127 kb on - strandat 414.127 kb on - strandat 414.127 kb on - strandat 414.127 kb on - strandat 414.127 kb on - strandat 414.127 kb on - strandat 414.129 kb on + strandat 414.129 kb on + strandat 414.129 kb on + strandat 414.130 kb on - strandat 414.130 kb on - strandat 414.130 kb on - strandat 414.132 kb on + strandat 414.132 kb on + strandat 414.132 kb on + strandat 414.132 kb on + strandat 414.133 kb on - strandat 414.133 kb on - strandat 414.133 kb on - strandat 414.133 kb on - strandat 414.133 kb on - strandat 414.134 kb on + strandat 414.136 kb on + strandat 414.136 kb on + strandat 414.137 kb on - strandat 414.137 kb on - strandat 414.142 kb on + strandat 414.143 kb on - strandat 414.159 kb on + strandat 414.219 kb on - strandat 414.277 kb on + strandat 414.490 kb on + strand, within GFF2361at 414.490 kb on + strand, within GFF2361at 414.490 kb on + strand, within GFF2361at 414.491 kb on - strand, within GFF2361at 414.491 kb on - strand, within GFF2361at 414.491 kb on - strand, within GFF2361at 414.491 kb on - strand, within GFF2361at 414.491 kb on - strand, within GFF2361at 414.491 kb on - strand, within GFF2361at 414.751 kb on + strand, within GFF2361at 414.751 kb on + strand, within GFF2361

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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411,162 + GFF2359 0.19 -1.1
411,162 + GFF2359 0.19 -0.4
411,162 + GFF2359 0.19 -0.1
411,163 - GFF2359 0.19 -1.8
411,163 - GFF2359 0.19 -1.4
411,163 - GFF2359 0.19 -0.7
411,163 - GFF2359 0.19 -0.3
411,452 - GFF2359 0.48 +0.1
411,452 - GFF2359 0.48 +0.7
411,484 + GFF2359 0.51 -0.3
411,484 + GFF2359 0.51 -0.2
411,484 + GFF2359 0.51 -2.1
411,484 + GFF2359 0.51 +0.5
411,484 + GFF2359 0.51 -0.9
411,485 - GFF2359 0.51 -0.9
411,485 - GFF2359 0.51 -0.1
411,485 - GFF2359 0.51 -0.2
411,485 - GFF2359 0.51 -0.1
411,485 - GFF2359 0.51 -0.3
411,485 - GFF2359 0.51 +0.7
411,499 + GFF2359 0.52 -0.0
411,500 - GFF2359 0.52 +0.4
411,500 - GFF2359 0.52 -1.4
411,500 - GFF2359 0.52 -1.4
411,500 - GFF2359 0.52 +0.4
411,847 + GFF2359 0.87 -0.5
411,847 + GFF2359 0.87 -1.7
411,847 + GFF2359 0.87 +0.2
411,847 + GFF2359 0.87 -1.6
411,847 + GFF2359 0.87 -1.0
411,848 - GFF2359 0.87 -0.4
411,848 - GFF2359 0.87 -0.5
411,848 - GFF2359 0.87 +0.2
411,848 - GFF2359 0.87 -1.9
411,908 - -0.5
411,977 - -1.2
411,977 - -0.9
411,995 + -0.5
411,995 + -1.6
411,995 + +0.3
411,995 + +0.7
412,101 - +0.6
412,101 - -0.4
412,238 + +0.2
412,238 + -0.7
412,238 + +0.1
412,238 + -0.9
412,238 + -0.8
412,238 + -0.6
412,239 - -0.4
412,239 - -0.2
412,239 - -1.1
412,239 - -0.7
412,239 - -2.1
412,239 - +0.3
412,239 - -0.6
412,239 - -0.4
412,239 - -0.4
412,239 - +0.4
412,239 - +0.4
412,239 - -0.3
412,886 + GFF2360 0.41 -2.3
412,886 + GFF2360 0.41 -0.8
412,887 - GFF2360 0.41 -0.1
412,904 + GFF2360 0.42 +0.4
412,905 - GFF2360 0.42 -1.1
412,905 - GFF2360 0.42 -1.0
412,905 - GFF2360 0.42 -1.3
413,150 + GFF2360 0.55 +0.0
413,150 + GFF2360 0.55 +1.7
413,151 - GFF2360 0.55 -0.8
413,189 + GFF2360 0.57 +1.3
413,252 + GFF2360 0.61 +0.1
413,252 + GFF2360 0.61 -0.2
413,252 + GFF2360 0.61 +1.4
413,252 + GFF2360 0.61 +0.2
413,252 + GFF2360 0.61 -0.2
413,252 + GFF2360 0.61 +0.4
413,252 + GFF2360 0.61 +0.4
413,252 + GFF2360 0.61 -0.0
413,252 + GFF2360 0.61 -1.4
413,252 + GFF2360 0.61 -0.7
413,252 + GFF2360 0.61 +0.5
413,252 + GFF2360 0.61 -0.1
413,252 + GFF2360 0.61 -0.8
413,253 - GFF2360 0.61 -0.0
413,253 - GFF2360 0.61 -0.4
413,253 - GFF2360 0.61 +1.2
413,253 - GFF2360 0.61 +2.2
413,253 - GFF2360 0.61 +0.4
413,253 - GFF2360 0.61 +1.5
413,253 - GFF2360 0.61 -0.0
413,253 - GFF2360 0.61 +0.5
413,253 - GFF2360 0.61 -0.1
413,253 - GFF2360 0.61 +0.9
413,253 - GFF2360 0.61 -1.1
413,253 - GFF2360 0.61 +0.5
413,253 - GFF2360 0.61 -0.1
413,261 + GFF2360 0.61 +0.2
413,261 + GFF2360 0.61 -0.1
413,261 + GFF2360 0.61 +0.2
413,261 + GFF2360 0.61 +0.1
413,262 - GFF2360 0.61 -0.7
413,262 - GFF2360 0.61 +0.2
413,300 + GFF2360 0.63 -2.3
413,300 + GFF2360 0.63 -0.4
413,300 + GFF2360 0.63 +0.7
413,300 + GFF2360 0.63 -0.1
413,300 + GFF2360 0.63 -0.2
413,300 + GFF2360 0.63 +1.0
413,300 + GFF2360 0.63 +0.4
413,300 + GFF2360 0.63 -0.1
413,300 + GFF2360 0.63 +0.6
413,300 + GFF2360 0.63 -0.9
413,301 - GFF2360 0.63 +0.0
413,301 - GFF2360 0.63 -0.3
413,301 - GFF2360 0.63 -1.3
413,301 - GFF2360 0.63 +0.0
413,327 + GFF2360 0.65 -1.1
413,327 + GFF2360 0.65 -0.8
413,328 - GFF2360 0.65 +1.5
413,328 - GFF2360 0.65 +0.3
413,373 - GFF2360 0.67 -0.7
413,402 + GFF2360 0.69 -1.5
413,402 + GFF2360 0.69 -1.3
413,402 + GFF2360 0.69 +1.4
413,402 + GFF2360 0.69 +0.7
413,402 + GFF2360 0.69 -0.3
413,402 + GFF2360 0.69 +0.1
413,403 - GFF2360 0.69 +1.7
413,403 - GFF2360 0.69 -0.6
413,403 - GFF2360 0.69 -0.4
413,403 - GFF2360 0.69 -0.6
413,403 - GFF2360 0.69 -0.7
413,403 - GFF2360 0.69 -1.1
413,403 - GFF2360 0.69 +0.5
413,403 - GFF2360 0.69 +0.4
413,435 + GFF2360 0.71 -3.4
413,436 - GFF2360 0.71 -0.5
413,436 - GFF2360 0.71 -1.4
413,441 + GFF2360 0.71 -0.7
413,442 + GFF2360 0.71 +0.1
413,442 + GFF2360 0.71 +0.7
413,442 + GFF2360 0.71 -0.6
413,442 + GFF2360 0.71 +0.1
413,442 + GFF2360 0.71 -2.2
413,442 + GFF2360 0.71 +0.4
413,442 + GFF2360 0.71 -0.6
413,443 - GFF2360 0.71 -0.4
413,443 - GFF2360 0.71 -2.5
413,443 - GFF2360 0.71 +1.3
413,443 - GFF2360 0.71 -0.3
413,443 - GFF2360 0.71 -1.8
413,443 - GFF2360 0.71 -0.4
413,443 - GFF2360 0.71 -0.6
413,443 - GFF2360 0.71 -0.7
413,443 - GFF2360 0.71 -1.0
413,443 - GFF2360 0.71 +0.7
413,443 - GFF2360 0.71 -1.3
413,443 - GFF2360 0.71 +0.1
413,443 - GFF2360 0.71 -0.9
413,443 - GFF2360 0.71 -0.8
413,444 + GFF2360 0.71 +0.2
413,444 + GFF2360 0.71 +0.4
413,444 + GFF2360 0.71 -0.2
413,444 + GFF2360 0.71 -0.1
413,444 + GFF2360 0.71 -1.0
413,444 + GFF2360 0.71 -1.6
413,444 + GFF2360 0.71 +0.3
413,444 + GFF2360 0.71 -0.4
413,444 + GFF2360 0.71 +0.2
413,444 + GFF2360 0.71 -0.7
413,444 + GFF2360 0.71 -0.0
413,444 + GFF2360 0.71 -2.8
413,444 + GFF2360 0.71 -0.8
413,444 + GFF2360 0.71 -1.0
413,444 + GFF2360 0.71 -0.6
413,444 + GFF2360 0.71 -0.6
413,445 - GFF2360 0.71 +0.2
413,445 - GFF2360 0.71 +0.7
413,445 - GFF2360 0.71 -1.1
413,445 - GFF2360 0.71 -0.6
413,445 - GFF2360 0.71 -0.8
413,445 - GFF2360 0.71 +0.4
413,445 - GFF2360 0.71 +0.3
413,445 - GFF2360 0.71 -0.6
413,445 - GFF2360 0.71 -1.2
413,445 - GFF2360 0.71 -1.1
413,445 - GFF2360 0.71 -0.5
413,445 - GFF2360 0.71 -0.3
413,445 - GFF2360 0.71 +0.2
413,445 - GFF2360 0.71 +0.4
413,445 - GFF2360 0.71 +0.4
413,445 - GFF2360 0.71 -0.2
413,445 - GFF2360 0.71 -0.6
413,567 + GFF2360 0.78 +0.8
413,567 + GFF2360 0.78 +0.9
413,568 - GFF2360 0.78 -0.4
413,576 + GFF2360 0.78 -0.5
413,576 + GFF2360 0.78 -0.1
413,576 + GFF2360 0.78 +0.4
413,576 + GFF2360 0.78 -0.3
413,577 - GFF2360 0.78 -1.1
413,577 - GFF2360 0.78 -1.1
413,577 - GFF2360 0.78 -0.3
413,577 - GFF2360 0.78 +0.7
413,577 - GFF2360 0.78 -0.5
413,577 - GFF2360 0.78 -0.2
413,833 + +0.7
413,833 + -0.2
413,833 + -0.1
413,834 - +0.7
413,834 - -1.7
414,105 + -0.4
414,105 + -0.1
414,105 + -0.4
414,106 - -0.5
414,106 - -0.3
414,106 - +0.2
414,106 - -1.1
414,106 - -0.6
414,118 + -0.0
414,123 + +0.2
414,123 + +1.0
414,123 + -0.5
414,123 + -0.4
414,123 + +2.7
414,124 - -2.2
414,124 - -1.8
414,124 - -0.4
414,124 - +1.3
414,124 - -1.6
414,124 - -0.3
414,124 - -2.7
414,124 - -0.4
414,126 + -2.2
414,126 + -0.2
414,126 + -0.8
414,126 + -0.2
414,126 + -1.2
414,126 + -0.7
414,126 + -0.7
414,126 + +1.5
414,127 - -0.3
414,127 - -0.5
414,127 - -0.5
414,127 - -0.4
414,127 - +0.2
414,127 - -0.1
414,127 - -0.5
414,127 - +0.3
414,127 - -0.3
414,127 - +0.4
414,127 - -0.3
414,127 - -0.2
414,127 - -0.1
414,129 + -0.6
414,129 + -0.1
414,129 + +1.7
414,130 - -0.1
414,130 - -0.2
414,130 - -1.5
414,132 + -0.4
414,132 + -0.4
414,132 + -0.8
414,132 + -0.1
414,133 - +0.7
414,133 - -0.0
414,133 - -0.4
414,133 - +0.4
414,133 - +0.2
414,134 + +1.2
414,136 + +1.0
414,136 + -0.6
414,137 - -1.6
414,137 - -0.3
414,142 + -1.0
414,143 - +0.2
414,159 + -1.4
414,219 - -0.6
414,277 + -2.1
414,490 + GFF2361 0.20 -0.2
414,490 + GFF2361 0.20 -0.6
414,490 + GFF2361 0.20 +0.9
414,491 - GFF2361 0.20 -0.8
414,491 - GFF2361 0.20 -0.3
414,491 - GFF2361 0.20 -0.2
414,491 - GFF2361 0.20 -0.3
414,491 - GFF2361 0.20 -0.3
414,491 - GFF2361 0.20 +0.1
414,751 + GFF2361 0.58 -0.3
414,751 + GFF2361 0.58 -2.1

Or see this region's nucleotide sequence